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A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs

Characterizing the spiking statistics of neurons receiving noisy synaptic input is a central problem in computational neuroscience. Monte Carlo approaches to this problem are computationally expensive and often fail to provide mechanistic insight. Thus, the field has seen the development of mathemat...

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Detalles Bibliográficos
Autor principal: Rosenbaum, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840919/
https://www.ncbi.nlm.nih.gov/pubmed/27148036
http://dx.doi.org/10.3389/fncom.2016.00039
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author Rosenbaum, Robert
author_facet Rosenbaum, Robert
author_sort Rosenbaum, Robert
collection PubMed
description Characterizing the spiking statistics of neurons receiving noisy synaptic input is a central problem in computational neuroscience. Monte Carlo approaches to this problem are computationally expensive and often fail to provide mechanistic insight. Thus, the field has seen the development of mathematical and numerical approaches, often relying on a Fokker-Planck formalism. These approaches force a compromise between biological realism, accuracy and computational efficiency. In this article we develop an extension of existing diffusion approximations to more accurately approximate the response of neurons with adaptation currents and noisy synaptic currents. The implementation refines existing numerical schemes for solving the associated Fokker-Planck equations to improve computationally efficiency and accuracy. Computer code implementing the developed algorithms is made available to the public.
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spelling pubmed-48409192016-05-04 A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs Rosenbaum, Robert Front Comput Neurosci Neuroscience Characterizing the spiking statistics of neurons receiving noisy synaptic input is a central problem in computational neuroscience. Monte Carlo approaches to this problem are computationally expensive and often fail to provide mechanistic insight. Thus, the field has seen the development of mathematical and numerical approaches, often relying on a Fokker-Planck formalism. These approaches force a compromise between biological realism, accuracy and computational efficiency. In this article we develop an extension of existing diffusion approximations to more accurately approximate the response of neurons with adaptation currents and noisy synaptic currents. The implementation refines existing numerical schemes for solving the associated Fokker-Planck equations to improve computationally efficiency and accuracy. Computer code implementing the developed algorithms is made available to the public. Frontiers Media S.A. 2016-04-22 /pmc/articles/PMC4840919/ /pubmed/27148036 http://dx.doi.org/10.3389/fncom.2016.00039 Text en Copyright © 2016 Rosenbaum. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Rosenbaum, Robert
A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs
title A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs
title_full A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs
title_fullStr A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs
title_full_unstemmed A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs
title_short A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs
title_sort diffusion approximation and numerical methods for adaptive neuron models with stochastic inputs
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840919/
https://www.ncbi.nlm.nih.gov/pubmed/27148036
http://dx.doi.org/10.3389/fncom.2016.00039
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