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A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs
Characterizing the spiking statistics of neurons receiving noisy synaptic input is a central problem in computational neuroscience. Monte Carlo approaches to this problem are computationally expensive and often fail to provide mechanistic insight. Thus, the field has seen the development of mathemat...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840919/ https://www.ncbi.nlm.nih.gov/pubmed/27148036 http://dx.doi.org/10.3389/fncom.2016.00039 |
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author | Rosenbaum, Robert |
author_facet | Rosenbaum, Robert |
author_sort | Rosenbaum, Robert |
collection | PubMed |
description | Characterizing the spiking statistics of neurons receiving noisy synaptic input is a central problem in computational neuroscience. Monte Carlo approaches to this problem are computationally expensive and often fail to provide mechanistic insight. Thus, the field has seen the development of mathematical and numerical approaches, often relying on a Fokker-Planck formalism. These approaches force a compromise between biological realism, accuracy and computational efficiency. In this article we develop an extension of existing diffusion approximations to more accurately approximate the response of neurons with adaptation currents and noisy synaptic currents. The implementation refines existing numerical schemes for solving the associated Fokker-Planck equations to improve computationally efficiency and accuracy. Computer code implementing the developed algorithms is made available to the public. |
format | Online Article Text |
id | pubmed-4840919 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48409192016-05-04 A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs Rosenbaum, Robert Front Comput Neurosci Neuroscience Characterizing the spiking statistics of neurons receiving noisy synaptic input is a central problem in computational neuroscience. Monte Carlo approaches to this problem are computationally expensive and often fail to provide mechanistic insight. Thus, the field has seen the development of mathematical and numerical approaches, often relying on a Fokker-Planck formalism. These approaches force a compromise between biological realism, accuracy and computational efficiency. In this article we develop an extension of existing diffusion approximations to more accurately approximate the response of neurons with adaptation currents and noisy synaptic currents. The implementation refines existing numerical schemes for solving the associated Fokker-Planck equations to improve computationally efficiency and accuracy. Computer code implementing the developed algorithms is made available to the public. Frontiers Media S.A. 2016-04-22 /pmc/articles/PMC4840919/ /pubmed/27148036 http://dx.doi.org/10.3389/fncom.2016.00039 Text en Copyright © 2016 Rosenbaum. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Rosenbaum, Robert A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs |
title | A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs |
title_full | A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs |
title_fullStr | A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs |
title_full_unstemmed | A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs |
title_short | A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs |
title_sort | diffusion approximation and numerical methods for adaptive neuron models with stochastic inputs |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840919/ https://www.ncbi.nlm.nih.gov/pubmed/27148036 http://dx.doi.org/10.3389/fncom.2016.00039 |
work_keys_str_mv | AT rosenbaumrobert adiffusionapproximationandnumericalmethodsforadaptiveneuronmodelswithstochasticinputs AT rosenbaumrobert diffusionapproximationandnumericalmethodsforadaptiveneuronmodelswithstochasticinputs |