Cargando…

Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments

Methane seep systems along continental margins host diverse and dynamic microbial assemblages, sustained in large part through the microbially mediated process of sulfate-coupled Anaerobic Oxidation of Methane (AOM). This methanotrophic metabolism has been linked to consortia of anaerobic methane-ox...

Descripción completa

Detalles Bibliográficos
Autores principales:	Trembath-Reichert, Elizabeth, Case, David H., Orphan, Victoria J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2016
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841229/ https://www.ncbi.nlm.nih.gov/pubmed/27114874 http://dx.doi.org/10.7717/peerj.1913

Ejemplares similares

Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea
por: Yu, Hang, et al.
Publicado: (2018)

Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea
por: Murali, Ranjani, et al.
Publicado: (2023)

Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome
por: Laso-Pérez, Rafael, et al.
Publicado: (2023)

Investigation of microbial community interactions between Lake Washington methanotrophs using genome-scale metabolic modeling
por: Islam, Mohammad Mazharul, et al.
Publicado: (2020)

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
por: Bolduc, Benjamin, et al.
Publicado: (2017)

Reverse Methanogenesis and Respiration in Methanotrophic Archaea
por: Timmers, Peer H. A., et al.
Publicado: (2017)

Composition and Metabolic Potential of Fe(III)-Reducing Enrichment Cultures of Methanotrophic ANME-2a Archaea and Associated Bacteria
por: Slobodkin, Alexander I., et al.
Publicado: (2023)

Genome-scale metabolic reconstruction and metabolic versatility of an obligate methanotroph Methylococcus capsulatus str. Bath
por: Gupta, Ankit, et al.
Publicado: (2019)

Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea
por: Chadwick, Grayson L., et al.
Publicado: (2022)

Current production by non-methanotrophic bacteria enriched from an anaerobic methane-oxidizing microbial community
por: Berger, S., et al.
Publicado: (2021)

Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea
por: Yang, Shanshan, et al.
Publicado: (2020)

Metabolic marker gene mining provides insight in global mcrA diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the Methanomassiliicoccales
por: Speth, Daan R., et al.
Publicado: (2018)

Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea
por: Skennerton, Connor T., et al.
Publicado: (2017)

Anaerobic Methanotrophic Archaea of the ANME-2d Cluster Are Active in a Low-sulfate, Iron-rich Freshwater Sediment
por: Weber, Hannah S., et al.
Publicado: (2017)

Enrichment of anaerobic nitrate-dependent methanotrophic ‘Candidatus Methanoperedens nitroreducens’ archaea from an Italian paddy field soil
por: Vaksmaa, Annika, et al.
Publicado: (2017)

A widespread group of large plasmids in methanotrophic Methanoperedens archaea
por: Schoelmerich, Marie C., et al.
Publicado: (2022)

Effect of methanogenic substrates on anaerobic oxidation of methane and sulfate reduction by an anaerobic methanotrophic enrichment
por: Meulepas, Roel J. W., et al.
Publicado: (2010)

High resolution depth distribution of Bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy
por: Lee, Hyo Jung, et al.
Publicado: (2015)

Erratum for Skennerton et al., “Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea”
por: Skennerton, Connor T., et al.
Publicado: (2017)

Segmentation of biventricle in cardiac cine MRI via nested capsule dense network
por: Zhang, Jilong, et al.
Publicado: (2022)

Members of the methanotrophic genus Methylomarinum inhabit inland mud pots
por: Fradet, Danielle T., et al.
Publicado: (2016)

Anaerobic methanotrophic archaea of the ANME-2d clade feature lipid composition that differs from other ANME archaea
por: Kurth, Julia M, et al.
Publicado: (2019)

FISH-quant v2: a scalable and modular tool for smFISH image analysis
por: Imbert, Arthur, et al.
Publicado: (2022)

The Bacteria Genome Pipeline (BAGEP): an automated, scalable workflow for bacteria genomes with Snakemake
por: Olawoye, Idowu B., et al.
Publicado: (2020)

Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners
por: Wang, Long, et al.
Publicado: (2022)

Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment
por: Case, David H., et al.
Publicado: (2017)

A brief survey of tools for genomic regions enrichment analysis
por: Chicco, Davide, et al.
Publicado: (2022)

Structural analysis of leucine, lysine and tryptophan mitochondrial tRNA of nesting turtles Caretta caretta (Testudines: Chelonioidea) in the Colombian Caribbean
por: Infante-Rojas, Harvey, et al.
Publicado: (2020)

A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea
por: Pereira, Inês A. Cardoso, et al.
Publicado: (2011)

Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?
por: Ozuolmez, Derya, et al.
Publicado: (2015)

DChIPRep, an R/Bioconductor package for differential enrichment analysis in chromatin studies
por: Chabbert, Christophe D., et al.
Publicado: (2016)

Understanding biochemistry: basic aspects of statistics for life sciences
por: Reid, Donald
Publicado: (2023)

PCAtest: testing the statistical significance of Principal Component Analysis in R
por: Camargo, Arley
Publicado: (2022)

A microbial survey of the International Space Station (ISS)
por: Lang, Jenna M., et al.
Publicado: (2017)

Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses
por: Dekas, Anne E, et al.
Publicado: (2016)

HiLDA: a statistical approach to investigate differences in mutational signatures
por: Yang, Zhi, et al.
Publicado: (2019)

RNAStat: An Integrated Tool for Statistical Analysis of RNA 3D Structures
por: Guo, Zhi-Hao, et al.
Publicado: (2022)

Ananke: temporal clustering reveals ecological dynamics of microbial communities
por: Hall, Michael W., et al.
Publicado: (2017)

Assessing alignment-based taxonomic classification of ancient microbial DNA
por: Eisenhofer, Raphael, et al.
Publicado: (2019)

Identifying optimal bioinformatics protocols for aerosol microbial community data
por: Miaow, Katie, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_1835oi6a99kq2atksqf6fhdl2n