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Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants

Bovine odorant-binding protein (bOBP) differs from other lipocalins by lacking the conserved disulfide bond and for being able to form the domain-swapped dimers. To identify structural features responsible for the formation of the bOBP unique dimeric structure and to understand the role of the domai...

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Autores principales: Stepanenko, Olga V., Roginskii, Denis O., Stepanenko, Olesya V., Kuznetsova, Irina M., Uversky, Vladimir N., Turoverov, Konstantin K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841250/
https://www.ncbi.nlm.nih.gov/pubmed/27114880
http://dx.doi.org/10.7717/peerj.1933
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author Stepanenko, Olga V.
Roginskii, Denis O.
Stepanenko, Olesya V.
Kuznetsova, Irina M.
Uversky, Vladimir N.
Turoverov, Konstantin K.
author_facet Stepanenko, Olga V.
Roginskii, Denis O.
Stepanenko, Olesya V.
Kuznetsova, Irina M.
Uversky, Vladimir N.
Turoverov, Konstantin K.
author_sort Stepanenko, Olga V.
collection PubMed
description Bovine odorant-binding protein (bOBP) differs from other lipocalins by lacking the conserved disulfide bond and for being able to form the domain-swapped dimers. To identify structural features responsible for the formation of the bOBP unique dimeric structure and to understand the role of the domain swapping on maintaining the native structure of the protein, structural properties of the recombinant wild type bOBP and its mutant that cannot dimerize via the domain swapping were analyzed. We also looked at the effect of the disulfide bond by designing a monomeric bOBPs with restored disulfide bond which is conserved in other lipocalins. Finally, to understand which features in the microenvironment of the bOBP tryptophan residues play a role in the defining peculiarities of the intrinsic fluorescence of this protein we designed and investigated single-tryptophan mutants of the monomeric bOBP. Our analysis revealed that the insertion of the glycine after the residue 121 of the bOBP prevents domain swapping and generates a stable monomeric protein bOBP-Gly121+. We also show that the restored disulfide bond in the GCC-bOBP mutant leads to the noticeable stabilization of the monomeric structure. Structural and functional analysis revealed that none of the amino acid substitutions introduced to the bOBP affected functional activity of the protein and that the ligand binding leads to the formation of a more compact and stable state of the recombinant bOBP and its mutant monomeric forms. Finally, analysis of the single-tryptophan mutants of the monomeric bOBP gave us a unique possibility to find peculiarities of the microenvironment of tryptophan residues which were not previously described.
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spelling pubmed-48412502016-04-25 Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants Stepanenko, Olga V. Roginskii, Denis O. Stepanenko, Olesya V. Kuznetsova, Irina M. Uversky, Vladimir N. Turoverov, Konstantin K. PeerJ Biochemistry Bovine odorant-binding protein (bOBP) differs from other lipocalins by lacking the conserved disulfide bond and for being able to form the domain-swapped dimers. To identify structural features responsible for the formation of the bOBP unique dimeric structure and to understand the role of the domain swapping on maintaining the native structure of the protein, structural properties of the recombinant wild type bOBP and its mutant that cannot dimerize via the domain swapping were analyzed. We also looked at the effect of the disulfide bond by designing a monomeric bOBPs with restored disulfide bond which is conserved in other lipocalins. Finally, to understand which features in the microenvironment of the bOBP tryptophan residues play a role in the defining peculiarities of the intrinsic fluorescence of this protein we designed and investigated single-tryptophan mutants of the monomeric bOBP. Our analysis revealed that the insertion of the glycine after the residue 121 of the bOBP prevents domain swapping and generates a stable monomeric protein bOBP-Gly121+. We also show that the restored disulfide bond in the GCC-bOBP mutant leads to the noticeable stabilization of the monomeric structure. Structural and functional analysis revealed that none of the amino acid substitutions introduced to the bOBP affected functional activity of the protein and that the ligand binding leads to the formation of a more compact and stable state of the recombinant bOBP and its mutant monomeric forms. Finally, analysis of the single-tryptophan mutants of the monomeric bOBP gave us a unique possibility to find peculiarities of the microenvironment of tryptophan residues which were not previously described. PeerJ Inc. 2016-04-18 /pmc/articles/PMC4841250/ /pubmed/27114880 http://dx.doi.org/10.7717/peerj.1933 Text en ©2016 Stepanenko et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biochemistry
Stepanenko, Olga V.
Roginskii, Denis O.
Stepanenko, Olesya V.
Kuznetsova, Irina M.
Uversky, Vladimir N.
Turoverov, Konstantin K.
Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants
title Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants
title_full Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants
title_fullStr Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants
title_full_unstemmed Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants
title_short Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants
title_sort structure and stability of recombinant bovine odorant-binding protein: i. design and analysis of monomeric mutants
topic Biochemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841250/
https://www.ncbi.nlm.nih.gov/pubmed/27114880
http://dx.doi.org/10.7717/peerj.1933
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