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Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease

Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribo...

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Autores principales: Shimizu, Jun, Kubota, Takao, Takada, Erika, Takai, Kenji, Fujiwara, Naruyoshi, Arimitsu, Nagisa, Ueda, Yuji, Wakisaka, Sueshige, Suzuki, Tomoko, Suzuki, Noboru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841557/
https://www.ncbi.nlm.nih.gov/pubmed/27105322
http://dx.doi.org/10.1371/journal.pone.0153746
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author Shimizu, Jun
Kubota, Takao
Takada, Erika
Takai, Kenji
Fujiwara, Naruyoshi
Arimitsu, Nagisa
Ueda, Yuji
Wakisaka, Sueshige
Suzuki, Tomoko
Suzuki, Noboru
author_facet Shimizu, Jun
Kubota, Takao
Takada, Erika
Takai, Kenji
Fujiwara, Naruyoshi
Arimitsu, Nagisa
Ueda, Yuji
Wakisaka, Sueshige
Suzuki, Tomoko
Suzuki, Noboru
author_sort Shimizu, Jun
collection PubMed
description Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria, including Bifidobacterium, and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD.
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spelling pubmed-48415572016-04-29 Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease Shimizu, Jun Kubota, Takao Takada, Erika Takai, Kenji Fujiwara, Naruyoshi Arimitsu, Nagisa Ueda, Yuji Wakisaka, Sueshige Suzuki, Tomoko Suzuki, Noboru PLoS One Research Article Gut microbiota compositional alteration may have an association with immune dysfunction in patients with Behcet’s disease (BD). We conducted a fecal metagenomic analysis of BD patients. We analyzed fecal microbiota obtained from 12 patients with BD and 12 normal individuals by sequencing of 16S ribosomal RNA gene. We compared the relative abundance of bacterial taxa. Direct comparison of the relative abundance of bacterial taxa demonstrated that the genera Bifidobacterium and Eggerthella increased significantly and the genera Megamonas and Prevotella decreased significantly in BD patients compared with normal individuals. A linear discriminant analysis of bacterial taxa showed that the phylum Actinobacteria, including Bifidobacterium, and the family Lactobacillaceae exhibited larger positive effect sizes than other bacteria in patients with BD. The phylum Firmicutes and the class Clostridia had large effect sizes in normal individuals. There was no significant difference in annotated species numbers (as numbers of operational taxonomic unit; OTU) and bacterial diversity of each sample (alpha diversity) between BD patients and normal individuals. We next assigned each sample to a position using three axes by principal coordinates analysis of the OTU table. The two groups had a significant distance as beta diversity in the 3-axis space. Fecal sIgA concentrations increased significantly in BD patients but did not correlate with any bacterial taxonomic abundance. These data suggest that the compositional changes of gut microbes may be one type of dysbiosis (unfavorable microbiota alteration) in patients with BD. The dysbiosis may have an association with the pathophysiology of BD. Public Library of Science 2016-04-22 /pmc/articles/PMC4841557/ /pubmed/27105322 http://dx.doi.org/10.1371/journal.pone.0153746 Text en © 2016 Shimizu et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Shimizu, Jun
Kubota, Takao
Takada, Erika
Takai, Kenji
Fujiwara, Naruyoshi
Arimitsu, Nagisa
Ueda, Yuji
Wakisaka, Sueshige
Suzuki, Tomoko
Suzuki, Noboru
Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease
title Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease
title_full Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease
title_fullStr Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease
title_full_unstemmed Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease
title_short Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease
title_sort bifidobacteria abundance-featured gut microbiota compositional change in patients with behcet’s disease
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841557/
https://www.ncbi.nlm.nih.gov/pubmed/27105322
http://dx.doi.org/10.1371/journal.pone.0153746
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