Cargando…
Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi
Rorippa indica, a wild crucifer, has been previously reported as the first identified plant in the germplasm of Brassicaceae known to be tolerant towards the mustard aphid Lipaphis erysimi Kaltenbach. We herein report the full-length cloning, expression, purification and characterization of a novel...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4842206/ https://www.ncbi.nlm.nih.gov/pubmed/27186475 http://dx.doi.org/10.1186/s40064-016-2144-2 |
_version_ | 1782428479790252032 |
---|---|
author | Sarkar, Poulami Jana, Jagannath Chatterjee, Subhrangshu Sikdar, Samir Ranjan |
author_facet | Sarkar, Poulami Jana, Jagannath Chatterjee, Subhrangshu Sikdar, Samir Ranjan |
author_sort | Sarkar, Poulami |
collection | PubMed |
description | Rorippa indica, a wild crucifer, has been previously reported as the first identified plant in the germplasm of Brassicaceae known to be tolerant towards the mustard aphid Lipaphis erysimi Kaltenbach. We herein report the full-length cloning, expression, purification and characterization of a novel R. indica defensin (RiD) and its efficacy against L. erysimi. Structural analysis through homology modeling of RiD showed longer α-helix and 3rd β-sheet as compared to Brassica juncea defensin (BjD). Recombinant RiD and BjD was purified for studying its efficacy against L. erysimi. In the artificial diet based insect bioassay, the LC(50) value of RiD against L. erysimi was found to be 9.099 ± 0.621 µg/mL which is far lower than that of BjD (43.51 ± 0.526 µg/mL). This indicates the possibility of RiD having different interacting partner and having better efficacy against L. erysimi over BjD. In the transient localization studies, RiD signal peptide directed the RiD: yellow fluorescent protein (YFP) fusion protein to the apoplastic regions which indicates that it might play a very important role in inhibiting nutrient uptake by aphids which follow mainly extracellular route to pierce through the cells. Hence, the present study has a significant implication for the future pest management program of B. juncea through the development of aphid tolerant transgenic plants. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40064-016-2144-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4842206 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-48422062016-05-16 Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi Sarkar, Poulami Jana, Jagannath Chatterjee, Subhrangshu Sikdar, Samir Ranjan Springerplus Research Rorippa indica, a wild crucifer, has been previously reported as the first identified plant in the germplasm of Brassicaceae known to be tolerant towards the mustard aphid Lipaphis erysimi Kaltenbach. We herein report the full-length cloning, expression, purification and characterization of a novel R. indica defensin (RiD) and its efficacy against L. erysimi. Structural analysis through homology modeling of RiD showed longer α-helix and 3rd β-sheet as compared to Brassica juncea defensin (BjD). Recombinant RiD and BjD was purified for studying its efficacy against L. erysimi. In the artificial diet based insect bioassay, the LC(50) value of RiD against L. erysimi was found to be 9.099 ± 0.621 µg/mL which is far lower than that of BjD (43.51 ± 0.526 µg/mL). This indicates the possibility of RiD having different interacting partner and having better efficacy against L. erysimi over BjD. In the transient localization studies, RiD signal peptide directed the RiD: yellow fluorescent protein (YFP) fusion protein to the apoplastic regions which indicates that it might play a very important role in inhibiting nutrient uptake by aphids which follow mainly extracellular route to pierce through the cells. Hence, the present study has a significant implication for the future pest management program of B. juncea through the development of aphid tolerant transgenic plants. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40064-016-2144-2) contains supplementary material, which is available to authorized users. Springer International Publishing 2016-04-23 /pmc/articles/PMC4842206/ /pubmed/27186475 http://dx.doi.org/10.1186/s40064-016-2144-2 Text en © Sarkar et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Sarkar, Poulami Jana, Jagannath Chatterjee, Subhrangshu Sikdar, Samir Ranjan Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi |
title | Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi |
title_full | Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi |
title_fullStr | Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi |
title_full_unstemmed | Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi |
title_short | Functional characterization of Rorippa indica defensin and its efficacy against Lipaphis erysimi |
title_sort | functional characterization of rorippa indica defensin and its efficacy against lipaphis erysimi |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4842206/ https://www.ncbi.nlm.nih.gov/pubmed/27186475 http://dx.doi.org/10.1186/s40064-016-2144-2 |
work_keys_str_mv | AT sarkarpoulami functionalcharacterizationofrorippaindicadefensinanditsefficacyagainstlipaphiserysimi AT janajagannath functionalcharacterizationofrorippaindicadefensinanditsefficacyagainstlipaphiserysimi AT chatterjeesubhrangshu functionalcharacterizationofrorippaindicadefensinanditsefficacyagainstlipaphiserysimi AT sikdarsamirranjan functionalcharacterizationofrorippaindicadefensinanditsefficacyagainstlipaphiserysimi |