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Directional genetic differentiation and relative migration

Understanding the population structure and patterns of gene flow within species is of fundamental importance to the study of evolution. In the fields of population and evolutionary genetics, measures of genetic differentiation are commonly used to gather this information. One potential caveat is tha...

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Autores principales: Sundqvist, Lisa, Keenan, Kevin, Zackrisson, Martin, Prodöhl, Paulo, Kleinhans, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4842207/
https://www.ncbi.nlm.nih.gov/pubmed/27127613
http://dx.doi.org/10.1002/ece3.2096
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author Sundqvist, Lisa
Keenan, Kevin
Zackrisson, Martin
Prodöhl, Paulo
Kleinhans, David
author_facet Sundqvist, Lisa
Keenan, Kevin
Zackrisson, Martin
Prodöhl, Paulo
Kleinhans, David
author_sort Sundqvist, Lisa
collection PubMed
description Understanding the population structure and patterns of gene flow within species is of fundamental importance to the study of evolution. In the fields of population and evolutionary genetics, measures of genetic differentiation are commonly used to gather this information. One potential caveat is that these measures assume gene flow to be symmetric. However, asymmetric gene flow is common in nature, especially in systems driven by physical processes such as wind or water currents. As information about levels of asymmetric gene flow among populations is essential for the correct interpretation of the distribution of contemporary genetic diversity within species, this should not be overlooked. To obtain information on asymmetric migration patterns from genetic data, complex models based on maximum‐likelihood or Bayesian approaches generally need to be employed, often at great computational cost. Here, a new simpler and more efficient approach for understanding gene flow patterns is presented. This approach allows the estimation of directional components of genetic divergence between pairs of populations at low computational effort, using any of the classical or modern measures of genetic differentiation. These directional measures of genetic differentiation can further be used to calculate directional relative migration and to detect asymmetries in gene flow patterns. This can be done in a user‐friendly web application called divMigrate‐online introduced in this study. Using simulated data sets with known gene flow regimes, we demonstrate that the method is capable of resolving complex migration patterns under a range of study designs.
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spelling pubmed-48422072016-04-28 Directional genetic differentiation and relative migration Sundqvist, Lisa Keenan, Kevin Zackrisson, Martin Prodöhl, Paulo Kleinhans, David Ecol Evol Original Research Understanding the population structure and patterns of gene flow within species is of fundamental importance to the study of evolution. In the fields of population and evolutionary genetics, measures of genetic differentiation are commonly used to gather this information. One potential caveat is that these measures assume gene flow to be symmetric. However, asymmetric gene flow is common in nature, especially in systems driven by physical processes such as wind or water currents. As information about levels of asymmetric gene flow among populations is essential for the correct interpretation of the distribution of contemporary genetic diversity within species, this should not be overlooked. To obtain information on asymmetric migration patterns from genetic data, complex models based on maximum‐likelihood or Bayesian approaches generally need to be employed, often at great computational cost. Here, a new simpler and more efficient approach for understanding gene flow patterns is presented. This approach allows the estimation of directional components of genetic divergence between pairs of populations at low computational effort, using any of the classical or modern measures of genetic differentiation. These directional measures of genetic differentiation can further be used to calculate directional relative migration and to detect asymmetries in gene flow patterns. This can be done in a user‐friendly web application called divMigrate‐online introduced in this study. Using simulated data sets with known gene flow regimes, we demonstrate that the method is capable of resolving complex migration patterns under a range of study designs. John Wiley and Sons Inc. 2016-04-20 /pmc/articles/PMC4842207/ /pubmed/27127613 http://dx.doi.org/10.1002/ece3.2096 Text en © 2016 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Sundqvist, Lisa
Keenan, Kevin
Zackrisson, Martin
Prodöhl, Paulo
Kleinhans, David
Directional genetic differentiation and relative migration
title Directional genetic differentiation and relative migration
title_full Directional genetic differentiation and relative migration
title_fullStr Directional genetic differentiation and relative migration
title_full_unstemmed Directional genetic differentiation and relative migration
title_short Directional genetic differentiation and relative migration
title_sort directional genetic differentiation and relative migration
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4842207/
https://www.ncbi.nlm.nih.gov/pubmed/27127613
http://dx.doi.org/10.1002/ece3.2096
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