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Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP

In most conditions, glucose is the best carbon source for E. coli: it provides faster growth than other sugars, and is consumed first in sugar mixtures. Here we identify conditions in which E. coli strains grow slower on glucose than on other sugars, namely when a single amino acid (arginine, glutam...

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Autores principales: Bren, Anat, Park, Junyoung O., Towbin, Benjamin D., Dekel, Erez, Rabinowitz, Joshua D., Alon, Uri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4843011/
https://www.ncbi.nlm.nih.gov/pubmed/27109914
http://dx.doi.org/10.1038/srep24834
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author Bren, Anat
Park, Junyoung O.
Towbin, Benjamin D.
Dekel, Erez
Rabinowitz, Joshua D.
Alon, Uri
author_facet Bren, Anat
Park, Junyoung O.
Towbin, Benjamin D.
Dekel, Erez
Rabinowitz, Joshua D.
Alon, Uri
author_sort Bren, Anat
collection PubMed
description In most conditions, glucose is the best carbon source for E. coli: it provides faster growth than other sugars, and is consumed first in sugar mixtures. Here we identify conditions in which E. coli strains grow slower on glucose than on other sugars, namely when a single amino acid (arginine, glutamate, or proline) is the sole nitrogen source. In sugar mixtures with these nitrogen sources, E. coli still consumes glucose first, but grows faster rather than slower after exhausting glucose, generating a reversed diauxic shift. We trace this counterintuitive behavior to a metabolic imbalance: levels of TCA-cycle metabolites including α-ketoglutarate are high, and levels of the key regulatory molecule cAMP are low. Growth rates were increased by experimentally increasing cAMP levels, either by adding external cAMP, by genetically perturbing the cAMP circuit or by inhibition of glucose uptake. Thus, the cAMP control circuitry seems to have a ‘bug’ that leads to slow growth under what may be an environmentally rare condition.
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spelling pubmed-48430112016-04-29 Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP Bren, Anat Park, Junyoung O. Towbin, Benjamin D. Dekel, Erez Rabinowitz, Joshua D. Alon, Uri Sci Rep Article In most conditions, glucose is the best carbon source for E. coli: it provides faster growth than other sugars, and is consumed first in sugar mixtures. Here we identify conditions in which E. coli strains grow slower on glucose than on other sugars, namely when a single amino acid (arginine, glutamate, or proline) is the sole nitrogen source. In sugar mixtures with these nitrogen sources, E. coli still consumes glucose first, but grows faster rather than slower after exhausting glucose, generating a reversed diauxic shift. We trace this counterintuitive behavior to a metabolic imbalance: levels of TCA-cycle metabolites including α-ketoglutarate are high, and levels of the key regulatory molecule cAMP are low. Growth rates were increased by experimentally increasing cAMP levels, either by adding external cAMP, by genetically perturbing the cAMP circuit or by inhibition of glucose uptake. Thus, the cAMP control circuitry seems to have a ‘bug’ that leads to slow growth under what may be an environmentally rare condition. Nature Publishing Group 2016-04-25 /pmc/articles/PMC4843011/ /pubmed/27109914 http://dx.doi.org/10.1038/srep24834 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Bren, Anat
Park, Junyoung O.
Towbin, Benjamin D.
Dekel, Erez
Rabinowitz, Joshua D.
Alon, Uri
Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP
title Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP
title_full Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP
title_fullStr Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP
title_full_unstemmed Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP
title_short Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP
title_sort glucose becomes one of the worst carbon sources for e.coli on poor nitrogen sources due to suboptimal levels of camp
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4843011/
https://www.ncbi.nlm.nih.gov/pubmed/27109914
http://dx.doi.org/10.1038/srep24834
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