Cargando…

Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

BACKGROUND: It is widely accepted that cultivated rice (Oryza sativa L.) was domesticated from common wild rice (Oryza rufipogon Griff.). Compared to other studies which concentrate on rice origin, this study is to genetically elucidate the substantially phenotypic and physiological changes from wil...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Fantao, Xu, Tao, Mao, Linyong, Yan, Shuangyong, Chen, Xiwen, Wu, Zhenfeng, Chen, Rui, Luo, Xiangdong, Xie, Jiankun, Gao, Shan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4845489/ https://www.ncbi.nlm.nih.gov/pubmed/27118394 http://dx.doi.org/10.1186/s12870-016-0788-2

Ejemplares similares

Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.)
por: Zhou, Yi, et al.
Publicado: (2016)

Identification, Analysis, and Confirmation of Seed Storability-Related Loci in Dongxiang Wild Rice (Oryza rufipogon Griff.)
por: Zhao, Minmin, et al.
Publicado: (2021)

Genome-Wide Analysis of microRNAs and Their Target Genes in Dongxiang Wild Rice (Oryza rufipogon Griff.) Responding to Salt Stress
por: Chen, Yong, et al.
Publicado: (2023)

MicroRNA2871b of Dongxiang Wild Rice (Oryza rufipogon Griff.) Negatively Regulates Cold and Salt Stress Tolerance in Transgenic Rice Plants
por: Yang, Wanling, et al.
Publicado: (2023)

Transcriptome analysis of phosphorus stress responsiveness in the seedlings of Dongxiang wild rice (Oryza rufipogon Griff.)
por: Deng, Qian-Wen, et al.
Publicado: (2018)

Identification of Phosphorus Stress Related Proteins in the Seedlings of Dongxiang Wild Rice (Oryza Rufipogon Griff.) Using Label-Free Quantitative Proteomic Analysis
por: Deng, Qianwen, et al.
Publicado: (2022)

Effects of drought stress on global gene expression profile in leaf and root samples of Dongxiang wild rice (Oryza rufipogon)
por: Zhang, Fantao, et al.
Publicado: (2017)

Cytological analysis for meiotic patterns in wild rice (Oryza rufipogon Griff.)
por: Sarkar, Sutanu, et al.
Publicado: (2016)

New Helvolic Acid Derivatives with Antibacterial Activities from Sarocladium oryzae DX-THL3, an Endophytic Fungus from Dongxiang Wild Rice (Oryza rufipogon Griff.)
por: Zhang, Zhi-Bin, et al.
Publicado: (2021)

Genetic diversity among perennial wild rice Oryza rufipogon Griff., in the Mekong Delta
por: Lam, Dinh T., et al.
Publicado: (2019)

Evaluation of Genetic Diversity and Development of a Core Collection of Wild Rice (Oryza rufipogon Griff.) Populations in China
por: Liu, Wen, et al.
Publicado: (2015)

Identification and Functional Analysis of Flowering Related microRNAs in Common Wild Rice (Oryza rufipogon Griff.)
por: Chen, Zongxiang, et al.
Publicado: (2013)

Metabolomic Profiling of Dongxiang Wild Rice Under Salinity Demonstrates the Significant Role of Amino Acids in Rice Salt Stress
por: Chen, Yaling, et al.
Publicado: (2021)

Chromosome-level genome assembly of Dongxiang wild rice (Oryza rufipogon) provides insights into resistance to disease and freezing
por: Que, Zhiqun, et al.
Publicado: (2022)

Identification of microRNAs in Response to Drought in Common Wild Rice (Oryza rufipogon Griff.) Shoots and Roots
por: Zhang, Jing-wen, et al.
Publicado: (2017)

Isolation and Characterization of a Green-Tissue Promoter from Common Wild Rice (Oryza rufipogon Griff.)
por: Xue, Mande, et al.
Publicado: (2018)

Genetic diversity of wild rice accessions (Oryza rufipogon Griff.) in Guangdong and Hainan Provinces, China, and construction of a wild rice core collection
por: Zhang, Jing, et al.
Publicado: (2022)

Genome wide re-sequencing of newly developed Rice Lines from common wild rice (Oryza rufipogon Griff.) for the identification of NBS-LRR genes
por: Liu, Wen, et al.
Publicado: (2017)

Full-length chloroplast genome of Dongxiang wild rice reveals small single-copy region switching
por: Liang, Jianguang, et al.
Publicado: (2022)

Morphological and Molecular Data Reveal Three Distinct Populations of Indian Wild Rice Oryza rufipogon Griff. Species Complex
por: Singh, Balwant, et al.
Publicado: (2018)

Combined analysis and miRNA expression profiles of the flowering related genes in common wild rice (oryza rufipogon Griff.)
por: Wang, Jiao, et al.
Publicado: (2018)

Genomic Analysis Provides Insights Into the Plant Architecture Variations in in situ Conserved Chinese Wild Rice (Oryza rufipogon Griff.)
por: Yang, Ziyi, et al.
Publicado: (2022)

Collection and Comparative Analysis of 1888 Full-length cDNAs from Wild Rice Oryza rufipogon Griff. W1943
por: Lu, Tingting, et al.
Publicado: (2008)

Diverse genetic variation in maternal lineages with high heterogeneity among in situ-conserved wild rice (Oryza rufipogon Griff.) developed in Thailand
por: Kaewcheenchai, Reunreudee, et al.
Publicado: (2018)

Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high‐temperature tolerance at the heading stage
por: Cao, Zhibin, et al.
Publicado: (2022)

High-resolution mapping and breeding application of a novel brown planthopper resistance gene derived from wild rice (Oryza. rufipogon Griff)
por: Li, Zhihua, et al.
Publicado: (2019)

Conservation recommendations for Oryza rufipogon Griff. in China based on genetic diversity analysis
por: Wang, Junrui, et al.
Publicado: (2020)

De novo Transcriptome Assembly of Common Wild Rice (Oryza rufipogon Griff.) and Discovery of Drought-Response Genes in Root Tissue Based on Transcriptomic Data
por: Tian, Xin-jie, et al.
Publicado: (2015)

Agrobacterium-Mediated High-Efficiency Genetic Transformation and Genome Editing of Chaling Common Wild Rice (Oryza rufipogon Griff.) Using Scutellum Tissue of Embryos in Mature Seeds
por: Xiang, Zhipan, et al.
Publicado: (2022)

Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress
por: Cen, Weijian, et al.
Publicado: (2018)

Call of the wild rice: Oryza rufipogon shapes weedy rice evolution in Southeast Asia
por: Vigueira, Cynthia C., et al.
Publicado: (2018)

Development of Chromosome Segment Substitution Lines (CSSLs) Derived from Guangxi Wild Rice (Oryza rufipogon Griff.) under Rice (Oryza sativa L.) Background and the Identification of QTLs for Plant Architecture, Agronomic Traits and Cold Tolerance
por: Yuan, Ruizhi, et al.
Publicado: (2020)

Detection of QTLs Regulating Six Agronomic Traits of Rice Based on Chromosome Segment Substitution Lines of Common Wild Rice (Oryza rufipogon Griff.) and Mapping of qPH1.1 and qLMC6.1
por: Zhao, Neng, et al.
Publicado: (2022)

Genetic Analysis of Novel Fertility Restoration Genes (qRf3 and qRf6) in Dongxiang Wild Rice Using GradedPool-Seq Mapping and QTL-Seq Correlation Analysis
por: Cai, Wenshan, et al.
Publicado: (2023)

Lowered Diversity and Increased Inbreeding Depression within Peripheral Populations of Wild Rice Oryza rufipogon
por: Gao, Li-Zhi, et al.
Publicado: (2016)

SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation
por: Li, Wei, et al.
Publicado: (2020)

Flavonoid Metabolic Profiles and Gene Mapping of Rice (Oryza sativa L.) Purple Gradient Grain Hulls
por: Zhang, Fantao, et al.
Publicado: (2022)

Development and Characterization of Chromosome Segment Substitution Lines Derived from Oryza rufipogon in the Background of the Oryza sativa indica Restorer Line R974
por: Ding, Gumu, et al.
Publicado: (2022)

Nitrogen, manganese, iron, and carbon resource acquisition are potential functions of the wild rice Oryza rufipogon core rhizomicrobiome
por: Chang, Jingjing, et al.
Publicado: (2022)

Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O. nivara in Sri Lanka
por: Sandamal, Salinda, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_q8ihpvqr8lelqp8gfhb3iuo187