Cargando…

A Comprehensive Characterization of Simple Sequence Repeats in the Sequenced Trichoderma Genomes Provides Valuable Resources for Marker Development

Members of genus Trichoderma are known worldwide for mycoparasitism. To gain a better insight into the organization and evolution of their genomes, we used an in silico approach to compare the occurrence, relative abundance and density of SSRs in Trichoderma atroviride, T. harzianum, T. reesei, and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mahfooz, Sahil, Singh, Satyendra P., Rakh, Ramraje, Bhattacharya, Arpita, Mishra, Nishtha, Singh, Poonam C., Chauhan, Puneet S., Nautiyal, Chandra S., Mishra, Aradhana
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2016
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4846858/ https://www.ncbi.nlm.nih.gov/pubmed/27199911 http://dx.doi.org/10.3389/fmicb.2016.00575

Ejemplares similares

A Comparison of Microsatellites in Phytopathogenic Aspergillus Species in Order to Develop Markers for the Assessment of Genetic Diversity among Its Isolates
por: Mahfooz, Sahil, et al.
Publicado: (2017)

Metabolite Profiling Reveals Abiotic Stress Tolerance in Tn5 Mutant of Pseudomonas putida
por: Chaudhry, Vasvi, et al.
Publicado: (2015)

Physico-Chemical Condition Optimization during Biosynthesis lead to development of Improved and Catalytically Efficient Gold Nano Particles
por: Kumari, Madhuree, et al.
Publicado: (2016)

Transcriptional alterations reveal Bacillus amyloliquefaciens-rice cooperation under salt stress
por: Chauhan, Puneet Singh, et al.
Publicado: (2019)

Draft Genome Sequence of Pseudomonas putida Strain MTCC5279
por: Chaudhry, Vasvi, et al.
Publicado: (2013)

MSDB: A Comprehensive Database of Simple Sequence Repeats
por: Avvaru, Akshay Kumar, et al.
Publicado: (2017)

Paenibacillus lentimorbus Inoculation Enhances Tobacco Growth and Extenuates the Virulence of Cucumber mosaic virus
por: Kumar, Susheel, et al.
Publicado: (2016)

A comprehensive characterization of simple sequence repeats in pepper genomes provides valuable resources for marker development in Capsicum
por: Cheng, Jiaowen, et al.
Publicado: (2016)

De novo assembly and characterization of root transcriptome in two distinct morphotypes of vetiver, Chrysopogon zizaniodes (L.) Roberty
por: Chakrabarty, Debasis, et al.
Publicado: (2015)

Microsatellite repeat dynamics in mitochondrial genomes of phytopathogenic fungi: frequency and distribution in the genic and intergenic regions
por: Mahfooz, Sahil, et al.
Publicado: (2012)

Unraveling Aspects of Bacillus amyloliquefaciens Mediated Enhanced Production of Rice under Biotic Stress of Rhizoctonia solani
por: Srivastava, Suchi, et al.
Publicado: (2016)

Identification and Expression Analyses of miRNAs from Two Contrasting Flower Color Cultivars of Canna by Deep Sequencing
por: Roy, Sribash, et al.
Publicado: (2016)

Elucidation of Complex Nature of PEG Induced Drought-Stress Response in Rice Root Using Comparative Proteomics Approach
por: Agrawal, Lalit, et al.
Publicado: (2016)

SSRD: Simple Sequence Repeats Database of the Human Genome
por: Subramanian, Subbaya, et al.
Publicado: (2003)

RISCI - Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes
por: Singh, Vipin, et al.
Publicado: (2010)

Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei
por: Yang, Dongqing, et al.
Publicado: (2015)

Optimization of sequence alignment for simple sequence repeat regions
por: Jighly, Abdulqader, et al.
Publicado: (2011)

Trichoderma spp. mediated induction of systemic defense response in brinjal against Sclerotinia sclerotiorum
por: Pratap Singh, Satyendra, et al.
Publicado: (2021)

Genome-wide characterization leading to simple sequence repeat (SSR) markers development in Shorea robusta
por: Mishra, Garima, et al.
Publicado: (2023)

Analysis of simple sequence repeats (SSRs)dynamics in fungus Fusarium graminearum
por: Singh, Rajender, et al.
Publicado: (2011)

In- silico exploration of thirty alphavirus genomes for analysis of the simple sequence repeats
por: Alam, Chaudhary Mashhood, et al.
Publicado: (2014)

Mining and survey of simple sequence repeats in wheat rust Puccinia sp
por: Singh, Rajender, et al.
Publicado: (2011)

Simple sequence repeats in Haemophilus influenzae
por: Power, Peter M., et al.
Publicado: (2009)

Omics-Based Mechanistic Insight Into the Role of Bioengineered Nanoparticles for Biotic Stress Amelioration by Modulating Plant Metabolic Pathways
por: Kumari, Madhuree, et al.
Publicado: (2020)

Dry cough in a middle-aged man
por: Singh, Sheetu, et al.
Publicado: (2016)

Genetic Diversity in Lens Species Revealed by EST and Genomic Simple Sequence Repeat Analysis
por: Dikshit, Harsh Kumar, et al.
Publicado: (2015)

Mining of simple sequence repeats in the Genome of Gentianaceae
por: Sathishkumar, R., et al.
Publicado: (2011)

Evidences for Piperine inhibiting cancer by targeting human G-quadruplex DNA sequences
por: Tawani, Arpita, et al.
Publicado: (2016)

High-Throughput Sequencing and Expression Analysis Suggest the Involvement of Pseudomonas putida RA-Responsive microRNAs in Growth and Development of Arabidopsis
por: Jatan, Ram, et al.
Publicado: (2020)

Sequencing and Analysis of the Entire Genome of the Mycoparasitic Fungus Trichoderma afroharzianum
por: Landeis, Anastasia, et al.
Publicado: (2021)

Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters
por: Li, Wan-Chen, et al.
Publicado: (2017)

Structural insight for the recognition of G-quadruplex structure at human c-myc promoter sequence by flavonoid Quercetin
por: Tawani, Arpita, et al.
Publicado: (2017)

Simple sequence repeat variation in the Daphnia pulex genome
por: Sung, Way, et al.
Publicado: (2010)

Evolution Analysis of Simple Sequence Repeats in Plant Genome
por: Qin, Zhen, et al.
Publicado: (2015)

The Cipher Code of Simple Sequence Repeats in “Vampire Pathogens”
por: Zou, Geng, et al.
Publicado: (2015)

EFFECT OF CERTAIN YOGIC ASANAS ON THE PELVIC CONGESTION AND IT'S ANATOMY
por: Mishra, Satyendra Prasad, et al.
Publicado: (1984)

TeaMiD: a comprehensive database of simple sequence repeat markers of tea
por: Dubey, Himanshu, et al.
Publicado: (2020)

Draft Whole-Genome Sequence of the Biocontrol Agent Trichoderma harzianum T6776
por: Baroncelli, Riccardo, et al.
Publicado: (2015)

Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride
por: Shi-Kunne, Xiaoqian, et al.
Publicado: (2015)

mtDNA Analysis: A Valuable Tool to Establish Relationships in Live Related Organ Transplants
por: Mishra, Vikash C., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_hfhrj60bi8401gh3au8u4srn2m