Cargando…

Construction of dynamic probabilistic protein interaction networks for protein complex identification

BACKGROUND: Recently, high-throughput experimental techniques have generated a large amount of protein-protein interaction (PPI) data which can construct large complex PPI networks for numerous organisms. System biology attempts to understand cellular organization and function by analyzing these PPI...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Yijia, Lin, Hongfei, Yang, Zhihao, Wang, Jian
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4847341/ https://www.ncbi.nlm.nih.gov/pubmed/27117946 http://dx.doi.org/10.1186/s12859-016-1054-1

Ejemplares similares

Construction of Ontology Augmented Networks for Protein Complex Prediction
por: Zhang, Yijia, et al.
Publicado: (2013)

An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks
por: Zhang, Yijia, et al.
Publicado: (2017)

Integrating experimental and literature protein-protein interaction data for protein complex prediction
por: Zhang, Yijia, et al.
Publicado: (2015)

Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks
por: Wang, Jian, et al.
Publicado: (2012)

A method for predicting protein complex in dynamic PPI networks
por: Zhang, Yijia, et al.
Publicado: (2016)

Ontology integration to identify protein complex in protein interaction networks
por: Xu, Bo, et al.
Publicado: (2011)

Protein Complex Identification by Integrating Protein-Protein Interaction Evidence from Multiple Sources
por: Xu, Bo, et al.
Publicado: (2013)

Chemical–protein interaction extraction via contextualized word representations and multihead attention
por: Zhang, Yijia, et al.
Publicado: (2019)

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks
por: Liu, Xiaoxia, et al.
Publicado: (2018)

HMNPPID—human malignant neoplasm protein–protein interaction database
por: Li, Qingqing, et al.
Publicado: (2019)

Document triage for identifying protein–protein interactions affected by mutations: a neural network ensemble approach
por: Luo, Ling, et al.
Publicado: (2018)

PLW: Probabilistic Local Walks for detecting protein complexes from protein interaction networks
por: Wong, Daniel Lin-Kit, et al.
Publicado: (2013)

Evidence of probabilistic behaviour in protein interaction networks
por: Ivanic, Joseph, et al.
Publicado: (2008)

Probabilistic identification of saccharide moieties in biomolecules and their protein complexes
por: Dashti, Hesam, et al.
Publicado: (2020)

DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks
por: Liu, Xiaoxia, et al.
Publicado: (2017)

A Graph Convolutional Network–Based Method for Chemical-Protein Interaction Extraction: Algorithm Development
por: Wang, Erniu, et al.
Publicado: (2020)

A Single Kernel-Based Approach to Extract Drug-Drug Interactions from Biomedical Literature
por: Zhang, Yijia, et al.
Publicado: (2012)

Small protein complex prediction algorithm based on protein–protein interaction network segmentation
por: Lyu, Jiaqing, et al.
Publicado: (2022)

Detecting protein complexes from active protein interaction networks constructed with dynamic gene expression profiles
por: Xiao, Qianghua, et al.
Publicado: (2013)

Generative probabilistic models for protein–protein interaction networks—the biclique perspective
por: Schweiger, Regev, et al.
Publicado: (2011)

Drug–drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths
por: Zhang, Yijia, et al.
Publicado: (2018)

Learning an enriched representation from unlabeled data for protein-protein interaction extraction
por: Li, Yanpeng, et al.
Publicado: (2010)

Identifying Protein Complexes from Dynamic Temporal Interval Protein-Protein Interaction Networks
por: Zhang, Jinxiong, et al.
Publicado: (2019)

Biomedical document triage using a hierarchical attention-based capsule network
por: Wang, Jian, et al.
Publicado: (2020)

Detecting temporal protein complexes from dynamic protein-protein interaction networks
por: Ou-Yang, Le, et al.
Publicado: (2014)

Protein complexes identification based on go attributed network embedding
por: Xu, Bo, et al.
Publicado: (2018)

A neural network approach to chemical and gene/protein entity recognition in patents
por: Luo, Ling, et al.
Publicado: (2018)

Probabilistic prediction and ranking of human protein-protein interactions
por: Scott, Michelle S, et al.
Publicado: (2007)

Statistical Approaches for the Construction and Interpretation of Human Protein-Protein Interaction Network
por: Hu, Yang, et al.
Publicado: (2016)

An attention-based effective neural model for drug-drug interactions extraction
por: Zheng, Wei, et al.
Publicado: (2017)

Construction and analysis of protein–protein interaction networks
por: Raman, Karthik
Publicado: (2010)

Reconstruction of the Protein-Protein Interaction Network for Protein Complexes Identification by Walking on the Protein Pair Fingerprints Similarity Network
por: Xu, Bo, et al.
Publicado: (2018)

Probabilistic Prediction of Contacts in Protein-Ligand Complexes
por: Hakulinen, Riku, et al.
Publicado: (2012)

Identification of protein complexes from multi-relationship protein interaction networks
por: Li, Xueyong, et al.
Publicado: (2016)

Identifying protein complexes with fuzzy machine learning model
por: Xu, Bo, et al.
Publicado: (2013)

Document-Level Biomedical Relation Extraction Using Graph Convolutional Network and Multihead Attention: Algorithm Development and Validation
por: Wang, Jian, et al.
Publicado: (2020)

PCGAN: a generative approach for protein complex identification from protein interaction networks
por: Pan, Yuliang, et al.
Publicado: (2023)

Relation Extraction of Protein Complexes from Dynamic Protein-Protein Interaction Network
por: Mohammadi Jenghara, Moslem, et al.
Publicado: (2021)

Modular analysis of the probabilistic genetic interaction network
por: Hou, Lin, et al.
Publicado: (2011)

Construction and contextualization approaches for protein-protein interaction networks
por: Badkas, Apurva, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_88vjhkaujfataa8oujeduoe8m2