Cargando…
Addressing inaccuracies in BLOSUM computation improves homology search performance
BACKGROUND: BLOSUM matrices belong to the most commonly used substitution matrix series for protein homology search and sequence alignments since their publication in 1992. In 2008, Styczynski et al. discovered miscalculations in the clustering step of the matrix computation. Still, the RBLOSUM64 ma...
Autores principales: | Hess, Martin, Keul, Frank, Goesele, Michael, Hamacher, Kay |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849092/ https://www.ncbi.nlm.nih.gov/pubmed/27122148 http://dx.doi.org/10.1186/s12859-016-1060-3 |
Ejemplares similares
-
PFASUM: a substitution matrix from Pfam structural alignments
por: Keul, Frank, et al.
Publicado: (2017) -
Splitting the BLOSUM Score into Numbers of Biological Significance
por: Fabris, Francesco, et al.
Publicado: (2007) -
Background frequencies for residue variability estimates: BLOSUM revisited
por: Mihalek, I, et al.
Publicado: (2007) -
RBLOSUM performs better than CorBLOSUM with lesser error per query
por: Govindarajan, Renganayaki, et al.
Publicado: (2018) -
Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database
por: Tung, Chi-Hua, et al.
Publicado: (2007)