Cargando…

Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1)

PREMISE OF THE STUDY: Microsatellite markers can be used to evaluate population structure and genetic diversity in native populations of Indigofera pseudotinctoria (Fabaceae) and assess genetic disturbance caused by nonnative plants of the same species. METHODS AND RESULTS: We developed 14 markers f...

Descripción completa

Detalles Bibliográficos
Autores principales: Otao, Tomoko, Kobayashi, Tatsuaki, Uehara, Koichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4850052/
https://www.ncbi.nlm.nih.gov/pubmed/27144104
http://dx.doi.org/10.3732/apps.1500110
_version_ 1782429615814344704
author Otao, Tomoko
Kobayashi, Tatsuaki
Uehara, Koichi
author_facet Otao, Tomoko
Kobayashi, Tatsuaki
Uehara, Koichi
author_sort Otao, Tomoko
collection PubMed
description PREMISE OF THE STUDY: Microsatellite markers can be used to evaluate population structure and genetic diversity in native populations of Indigofera pseudotinctoria (Fabaceae) and assess genetic disturbance caused by nonnative plants of the same species. METHODS AND RESULTS: We developed 14 markers for I. pseudotinctoria using next-generation sequencing and applied them to test two native populations, totaling 77 individuals, and a transplanted population, imported from a foreign country, of 17 individuals. The mean number of alleles was 3.310, observed heterozygosity was 0.242, and expected heterozygosity was 0.346. The fixation index in the transplanted population was 0.469, which was higher than in the native populations (0.154 and 0.158). In addition, the transplanted population contains one allele that is not shared by the native population. CONCLUSIONS: Microsatellite markers can be useful for evaluating genetic diversity within and between populations and for studying population genetics in I. pseudotinctoria and related species.
format Online
Article
Text
id pubmed-4850052
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-48500522016-05-03 Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1) Otao, Tomoko Kobayashi, Tatsuaki Uehara, Koichi Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite markers can be used to evaluate population structure and genetic diversity in native populations of Indigofera pseudotinctoria (Fabaceae) and assess genetic disturbance caused by nonnative plants of the same species. METHODS AND RESULTS: We developed 14 markers for I. pseudotinctoria using next-generation sequencing and applied them to test two native populations, totaling 77 individuals, and a transplanted population, imported from a foreign country, of 17 individuals. The mean number of alleles was 3.310, observed heterozygosity was 0.242, and expected heterozygosity was 0.346. The fixation index in the transplanted population was 0.469, which was higher than in the native populations (0.154 and 0.158). In addition, the transplanted population contains one allele that is not shared by the native population. CONCLUSIONS: Microsatellite markers can be useful for evaluating genetic diversity within and between populations and for studying population genetics in I. pseudotinctoria and related species. Botanical Society of America 2016-04-18 /pmc/articles/PMC4850052/ /pubmed/27144104 http://dx.doi.org/10.3732/apps.1500110 Text en © 2016 Otao et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Otao, Tomoko
Kobayashi, Tatsuaki
Uehara, Koichi
Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1)
title Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1)
title_full Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1)
title_fullStr Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1)
title_full_unstemmed Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1)
title_short Development and characterization of 14 microsatellite markers for Indigofera pseudotinctoria (Fabaceae)(1)
title_sort development and characterization of 14 microsatellite markers for indigofera pseudotinctoria (fabaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4850052/
https://www.ncbi.nlm.nih.gov/pubmed/27144104
http://dx.doi.org/10.3732/apps.1500110
work_keys_str_mv AT otaotomoko developmentandcharacterizationof14microsatellitemarkersforindigoferapseudotinctoriafabaceae1
AT kobayashitatsuaki developmentandcharacterizationof14microsatellitemarkersforindigoferapseudotinctoriafabaceae1
AT ueharakoichi developmentandcharacterizationof14microsatellitemarkersforindigoferapseudotinctoriafabaceae1