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Diverse human extracellular RNAs are widely detected in human plasma
There is growing appreciation for the importance of non-protein-coding genes in development and disease. Although much is known about microRNAs, limitations in bioinformatic analyses of RNA sequencing have precluded broad assessment of other forms of small-RNAs in humans. By analysing sequencing dat...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4853467/ https://www.ncbi.nlm.nih.gov/pubmed/27112789 http://dx.doi.org/10.1038/ncomms11106 |
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author | Freedman, Jane E. Gerstein, Mark Mick, Eric Rozowsky, Joel Levy, Daniel Kitchen, Robert Das, Saumya Shah, Ravi Danielson, Kirsty Beaulieu, Lea Navarro, Fabio C. P. Wang, Yaoyu Galeev, Timur R. Holman, Alex Kwong, Raymond Y. Murthy, Venkatesh Tanriverdi, Selim E. Koupenova, Milka Mikhalev, Ekaterina Tanriverdi, Kahraman |
author_facet | Freedman, Jane E. Gerstein, Mark Mick, Eric Rozowsky, Joel Levy, Daniel Kitchen, Robert Das, Saumya Shah, Ravi Danielson, Kirsty Beaulieu, Lea Navarro, Fabio C. P. Wang, Yaoyu Galeev, Timur R. Holman, Alex Kwong, Raymond Y. Murthy, Venkatesh Tanriverdi, Selim E. Koupenova, Milka Mikhalev, Ekaterina Tanriverdi, Kahraman |
author_sort | Freedman, Jane E. |
collection | PubMed |
description | There is growing appreciation for the importance of non-protein-coding genes in development and disease. Although much is known about microRNAs, limitations in bioinformatic analyses of RNA sequencing have precluded broad assessment of other forms of small-RNAs in humans. By analysing sequencing data from plasma-derived RNA from 40 individuals, here we identified over a thousand human extracellular RNAs including microRNAs, piwi-interacting RNA (piRNA), and small nucleolar RNAs. Using a targeted quantitative PCR with reverse transcription approach in an additional 2,763 individuals, we characterized almost 500 of the most abundant extracellular transcripts including microRNAs, piRNAs and small nucleolar RNAs. The presence in plasma of many non-microRNA small-RNAs was confirmed in an independent cohort. We present comprehensive data to demonstrate the broad and consistent detection of diverse classes of circulating non-cellular small-RNAs from a large population. |
format | Online Article Text |
id | pubmed-4853467 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48534672016-05-10 Diverse human extracellular RNAs are widely detected in human plasma Freedman, Jane E. Gerstein, Mark Mick, Eric Rozowsky, Joel Levy, Daniel Kitchen, Robert Das, Saumya Shah, Ravi Danielson, Kirsty Beaulieu, Lea Navarro, Fabio C. P. Wang, Yaoyu Galeev, Timur R. Holman, Alex Kwong, Raymond Y. Murthy, Venkatesh Tanriverdi, Selim E. Koupenova, Milka Mikhalev, Ekaterina Tanriverdi, Kahraman Nat Commun Article There is growing appreciation for the importance of non-protein-coding genes in development and disease. Although much is known about microRNAs, limitations in bioinformatic analyses of RNA sequencing have precluded broad assessment of other forms of small-RNAs in humans. By analysing sequencing data from plasma-derived RNA from 40 individuals, here we identified over a thousand human extracellular RNAs including microRNAs, piwi-interacting RNA (piRNA), and small nucleolar RNAs. Using a targeted quantitative PCR with reverse transcription approach in an additional 2,763 individuals, we characterized almost 500 of the most abundant extracellular transcripts including microRNAs, piRNAs and small nucleolar RNAs. The presence in plasma of many non-microRNA small-RNAs was confirmed in an independent cohort. We present comprehensive data to demonstrate the broad and consistent detection of diverse classes of circulating non-cellular small-RNAs from a large population. Nature Publishing Group 2016-04-26 /pmc/articles/PMC4853467/ /pubmed/27112789 http://dx.doi.org/10.1038/ncomms11106 Text en Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Freedman, Jane E. Gerstein, Mark Mick, Eric Rozowsky, Joel Levy, Daniel Kitchen, Robert Das, Saumya Shah, Ravi Danielson, Kirsty Beaulieu, Lea Navarro, Fabio C. P. Wang, Yaoyu Galeev, Timur R. Holman, Alex Kwong, Raymond Y. Murthy, Venkatesh Tanriverdi, Selim E. Koupenova, Milka Mikhalev, Ekaterina Tanriverdi, Kahraman Diverse human extracellular RNAs are widely detected in human plasma |
title | Diverse human extracellular RNAs are widely detected in human plasma |
title_full | Diverse human extracellular RNAs are widely detected in human plasma |
title_fullStr | Diverse human extracellular RNAs are widely detected in human plasma |
title_full_unstemmed | Diverse human extracellular RNAs are widely detected in human plasma |
title_short | Diverse human extracellular RNAs are widely detected in human plasma |
title_sort | diverse human extracellular rnas are widely detected in human plasma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4853467/ https://www.ncbi.nlm.nih.gov/pubmed/27112789 http://dx.doi.org/10.1038/ncomms11106 |
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