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Diverse human extracellular RNAs are widely detected in human plasma

There is growing appreciation for the importance of non-protein-coding genes in development and disease. Although much is known about microRNAs, limitations in bioinformatic analyses of RNA sequencing have precluded broad assessment of other forms of small-RNAs in humans. By analysing sequencing dat...

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Autores principales: Freedman, Jane E., Gerstein, Mark, Mick, Eric, Rozowsky, Joel, Levy, Daniel, Kitchen, Robert, Das, Saumya, Shah, Ravi, Danielson, Kirsty, Beaulieu, Lea, Navarro, Fabio C. P., Wang, Yaoyu, Galeev, Timur R., Holman, Alex, Kwong, Raymond Y., Murthy, Venkatesh, Tanriverdi, Selim E., Koupenova, Milka, Mikhalev, Ekaterina, Tanriverdi, Kahraman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4853467/
https://www.ncbi.nlm.nih.gov/pubmed/27112789
http://dx.doi.org/10.1038/ncomms11106
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author Freedman, Jane E.
Gerstein, Mark
Mick, Eric
Rozowsky, Joel
Levy, Daniel
Kitchen, Robert
Das, Saumya
Shah, Ravi
Danielson, Kirsty
Beaulieu, Lea
Navarro, Fabio C. P.
Wang, Yaoyu
Galeev, Timur R.
Holman, Alex
Kwong, Raymond Y.
Murthy, Venkatesh
Tanriverdi, Selim E.
Koupenova, Milka
Mikhalev, Ekaterina
Tanriverdi, Kahraman
author_facet Freedman, Jane E.
Gerstein, Mark
Mick, Eric
Rozowsky, Joel
Levy, Daniel
Kitchen, Robert
Das, Saumya
Shah, Ravi
Danielson, Kirsty
Beaulieu, Lea
Navarro, Fabio C. P.
Wang, Yaoyu
Galeev, Timur R.
Holman, Alex
Kwong, Raymond Y.
Murthy, Venkatesh
Tanriverdi, Selim E.
Koupenova, Milka
Mikhalev, Ekaterina
Tanriverdi, Kahraman
author_sort Freedman, Jane E.
collection PubMed
description There is growing appreciation for the importance of non-protein-coding genes in development and disease. Although much is known about microRNAs, limitations in bioinformatic analyses of RNA sequencing have precluded broad assessment of other forms of small-RNAs in humans. By analysing sequencing data from plasma-derived RNA from 40 individuals, here we identified over a thousand human extracellular RNAs including microRNAs, piwi-interacting RNA (piRNA), and small nucleolar RNAs. Using a targeted quantitative PCR with reverse transcription approach in an additional 2,763 individuals, we characterized almost 500 of the most abundant extracellular transcripts including microRNAs, piRNAs and small nucleolar RNAs. The presence in plasma of many non-microRNA small-RNAs was confirmed in an independent cohort. We present comprehensive data to demonstrate the broad and consistent detection of diverse classes of circulating non-cellular small-RNAs from a large population.
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spelling pubmed-48534672016-05-10 Diverse human extracellular RNAs are widely detected in human plasma Freedman, Jane E. Gerstein, Mark Mick, Eric Rozowsky, Joel Levy, Daniel Kitchen, Robert Das, Saumya Shah, Ravi Danielson, Kirsty Beaulieu, Lea Navarro, Fabio C. P. Wang, Yaoyu Galeev, Timur R. Holman, Alex Kwong, Raymond Y. Murthy, Venkatesh Tanriverdi, Selim E. Koupenova, Milka Mikhalev, Ekaterina Tanriverdi, Kahraman Nat Commun Article There is growing appreciation for the importance of non-protein-coding genes in development and disease. Although much is known about microRNAs, limitations in bioinformatic analyses of RNA sequencing have precluded broad assessment of other forms of small-RNAs in humans. By analysing sequencing data from plasma-derived RNA from 40 individuals, here we identified over a thousand human extracellular RNAs including microRNAs, piwi-interacting RNA (piRNA), and small nucleolar RNAs. Using a targeted quantitative PCR with reverse transcription approach in an additional 2,763 individuals, we characterized almost 500 of the most abundant extracellular transcripts including microRNAs, piRNAs and small nucleolar RNAs. The presence in plasma of many non-microRNA small-RNAs was confirmed in an independent cohort. We present comprehensive data to demonstrate the broad and consistent detection of diverse classes of circulating non-cellular small-RNAs from a large population. Nature Publishing Group 2016-04-26 /pmc/articles/PMC4853467/ /pubmed/27112789 http://dx.doi.org/10.1038/ncomms11106 Text en Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Freedman, Jane E.
Gerstein, Mark
Mick, Eric
Rozowsky, Joel
Levy, Daniel
Kitchen, Robert
Das, Saumya
Shah, Ravi
Danielson, Kirsty
Beaulieu, Lea
Navarro, Fabio C. P.
Wang, Yaoyu
Galeev, Timur R.
Holman, Alex
Kwong, Raymond Y.
Murthy, Venkatesh
Tanriverdi, Selim E.
Koupenova, Milka
Mikhalev, Ekaterina
Tanriverdi, Kahraman
Diverse human extracellular RNAs are widely detected in human plasma
title Diverse human extracellular RNAs are widely detected in human plasma
title_full Diverse human extracellular RNAs are widely detected in human plasma
title_fullStr Diverse human extracellular RNAs are widely detected in human plasma
title_full_unstemmed Diverse human extracellular RNAs are widely detected in human plasma
title_short Diverse human extracellular RNAs are widely detected in human plasma
title_sort diverse human extracellular rnas are widely detected in human plasma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4853467/
https://www.ncbi.nlm.nih.gov/pubmed/27112789
http://dx.doi.org/10.1038/ncomms11106
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