Cargando…
Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive
Sea urchins have specialized adhesive organs called tube feet, which mediate strong but reversible adhesion. Tube feet are composed by a disc, producing adhesive and de-adhesive secretions for substratum attachment, and a stem for movement. After detachment the secreted adhesive remains bound to the...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857396/ https://www.ncbi.nlm.nih.gov/pubmed/27182547 http://dx.doi.org/10.1016/j.dib.2016.04.002 |
_version_ | 1782430650833305600 |
---|---|
author | Lebesgue, Nicolas da Costa, Gonçalo Ribeiro, Raquel Mesquita Ribeiro-Silva, Cristina Martins, Gabriel G. Matranga, Valeria Scholten, Arjen Cordeiro, Carlos Heck, Albert J.R. Santos, Romana |
author_facet | Lebesgue, Nicolas da Costa, Gonçalo Ribeiro, Raquel Mesquita Ribeiro-Silva, Cristina Martins, Gabriel G. Matranga, Valeria Scholten, Arjen Cordeiro, Carlos Heck, Albert J.R. Santos, Romana |
author_sort | Lebesgue, Nicolas |
collection | PubMed |
description | Sea urchins have specialized adhesive organs called tube feet, which mediate strong but reversible adhesion. Tube feet are composed by a disc, producing adhesive and de-adhesive secretions for substratum attachment, and a stem for movement. After detachment the secreted adhesive remains bound to the substratum as a footprint. Recently, a label-free quantitative proteomic approach coupled with the latest mass-spectrometry technology was used to analyze the differential proteome of Paracentrotus lividus adhesive organ, comparing protein expression levels in the tube feet adhesive part (the disc) versus the non-adhesive part (the stem), and also to profile the proteome of the secreted adhesive (glue). This data article contains complementary figures and results related to the research article “Deciphering the molecular mechanisms underlying sea urchin reversible adhesion: a quantitative proteomics approach” (Lebesgue et al., 2016) [1]. Here we provide a dataset of 1384 non-redundant proteins, their fragmented peptides and expression levels, resultant from the analysis of the tube feet differential proteome. Of these, 163 highly over-expressed tube feet disc proteins (>3-fold), likely representing the most relevant proteins for sea urchin reversible adhesion, were further annotated in order to determine the potential functions. In addition, we provide a dataset of 611 non-redundant proteins identified in the secreted adhesive proteome, as well as their functional annotation and grouping in 5 major protein groups related with adhesive exocytosis, and microbial protection. This list was further analyzed to identify the most abundant protein groups and pinpoint putative adhesive proteins, such as Nectin, the most abundant adhesive protein in sea urchin glue. The obtained data uncover the key proteins involved in sea urchins reversible adhesion, representing a step forward to the development of new wet-effective bio-inspired adhesives. |
format | Online Article Text |
id | pubmed-4857396 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48573962016-05-13 Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive Lebesgue, Nicolas da Costa, Gonçalo Ribeiro, Raquel Mesquita Ribeiro-Silva, Cristina Martins, Gabriel G. Matranga, Valeria Scholten, Arjen Cordeiro, Carlos Heck, Albert J.R. Santos, Romana Data Brief Data Article Sea urchins have specialized adhesive organs called tube feet, which mediate strong but reversible adhesion. Tube feet are composed by a disc, producing adhesive and de-adhesive secretions for substratum attachment, and a stem for movement. After detachment the secreted adhesive remains bound to the substratum as a footprint. Recently, a label-free quantitative proteomic approach coupled with the latest mass-spectrometry technology was used to analyze the differential proteome of Paracentrotus lividus adhesive organ, comparing protein expression levels in the tube feet adhesive part (the disc) versus the non-adhesive part (the stem), and also to profile the proteome of the secreted adhesive (glue). This data article contains complementary figures and results related to the research article “Deciphering the molecular mechanisms underlying sea urchin reversible adhesion: a quantitative proteomics approach” (Lebesgue et al., 2016) [1]. Here we provide a dataset of 1384 non-redundant proteins, their fragmented peptides and expression levels, resultant from the analysis of the tube feet differential proteome. Of these, 163 highly over-expressed tube feet disc proteins (>3-fold), likely representing the most relevant proteins for sea urchin reversible adhesion, were further annotated in order to determine the potential functions. In addition, we provide a dataset of 611 non-redundant proteins identified in the secreted adhesive proteome, as well as their functional annotation and grouping in 5 major protein groups related with adhesive exocytosis, and microbial protection. This list was further analyzed to identify the most abundant protein groups and pinpoint putative adhesive proteins, such as Nectin, the most abundant adhesive protein in sea urchin glue. The obtained data uncover the key proteins involved in sea urchins reversible adhesion, representing a step forward to the development of new wet-effective bio-inspired adhesives. Elsevier 2016-04-22 /pmc/articles/PMC4857396/ /pubmed/27182547 http://dx.doi.org/10.1016/j.dib.2016.04.002 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Lebesgue, Nicolas da Costa, Gonçalo Ribeiro, Raquel Mesquita Ribeiro-Silva, Cristina Martins, Gabriel G. Matranga, Valeria Scholten, Arjen Cordeiro, Carlos Heck, Albert J.R. Santos, Romana Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive |
title | Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive |
title_full | Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive |
title_fullStr | Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive |
title_full_unstemmed | Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive |
title_short | Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive |
title_sort | proteomic dataset of the sea urchin paracentrotus lividus adhesive organs and secreted adhesive |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857396/ https://www.ncbi.nlm.nih.gov/pubmed/27182547 http://dx.doi.org/10.1016/j.dib.2016.04.002 |
work_keys_str_mv | AT lebesguenicolas proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT dacostagoncalo proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT ribeiroraquelmesquita proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT ribeirosilvacristina proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT martinsgabrielg proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT matrangavaleria proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT scholtenarjen proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT cordeirocarlos proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT heckalbertjr proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive AT santosromana proteomicdatasetoftheseaurchinparacentrotuslividusadhesiveorgansandsecretedadhesive |