The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers

Data specific to 486 strains belonging to Fusarium graminearum and Fusarium culmorum were manually collected from Luxembourg field monitoring campaigns between the year 2007 ad 2013. It is of interest to store such data in a web-enabled advanced database to help in epidemiological studies. Hence, we...

Descripción completa

Detalles Bibliográficos
Autores principales: Piec, Jonathan, Pallez, Marine, Beyer, Marco, Vogelgsang, Susanne, Hoffmann, Lucien, Pasquali, Matias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2016
Materias:
Database
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857456/
https://www.ncbi.nlm.nih.gov/pubmed/27212835
http://dx.doi.org/10.6026/97320630012001
_version_ 1782430662412730368
author Piec, Jonathan
Pallez, Marine
Beyer, Marco
Vogelgsang, Susanne
Hoffmann, Lucien
Pasquali, Matias
author_facet Piec, Jonathan
Pallez, Marine
Beyer, Marco
Vogelgsang, Susanne
Hoffmann, Lucien
Pasquali, Matias
author_sort Piec, Jonathan
collection PubMed
description Data specific to 486 strains belonging to Fusarium graminearum and Fusarium culmorum were manually collected from Luxembourg field monitoring campaigns between the year 2007 ad 2013. It is of interest to store such data in a web-enabled advanced database to help in epidemiological studies. Hence, we describe the design and development of a Fusarium database added to the Luxembourg Microbial Culture Collection (LuxMCC™) web interface at the Luxembourg Institute of Science and Technology (LIST). The database has three main features: (1) filter search, (2) detailed viewer of isolate information, and (3) excel export function of the dataset. Information on fungal strains includes genetic chemotypes, data on selected agronomic factors and crop management issues with geographic localization. The database constitutes a rich source of data for addressing epidemiological issues related to these two species. It will be regularly updated with improved features for advancement and utility
format Online
Article
Text
id pubmed-4857456
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Biomedical Informatics
record_format MEDLINE/PubMed
spelling pubmed-48574562016-05-20 The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers Piec, Jonathan Pallez, Marine Beyer, Marco Vogelgsang, Susanne Hoffmann, Lucien Pasquali, Matias Bioinformation Database Data specific to 486 strains belonging to Fusarium graminearum and Fusarium culmorum were manually collected from Luxembourg field monitoring campaigns between the year 2007 ad 2013. It is of interest to store such data in a web-enabled advanced database to help in epidemiological studies. Hence, we describe the design and development of a Fusarium database added to the Luxembourg Microbial Culture Collection (LuxMCC™) web interface at the Luxembourg Institute of Science and Technology (LIST). The database has three main features: (1) filter search, (2) detailed viewer of isolate information, and (3) excel export function of the dataset. Information on fungal strains includes genetic chemotypes, data on selected agronomic factors and crop management issues with geographic localization. The database constitutes a rich source of data for addressing epidemiological issues related to these two species. It will be regularly updated with improved features for advancement and utility Biomedical Informatics 2016-01-31 /pmc/articles/PMC4857456/ /pubmed/27212835 http://dx.doi.org/10.6026/97320630012001 Text en © 2016 Biomedical Informatics This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Database
Piec, Jonathan
Pallez, Marine
Beyer, Marco
Vogelgsang, Susanne
Hoffmann, Lucien
Pasquali, Matias
The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_full The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_fullStr The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_full_unstemmed The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_short The Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_sort luxembourg database of trichothecene type b f. graminearum and f. culmorum producers
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857456/
https://www.ncbi.nlm.nih.gov/pubmed/27212835
http://dx.doi.org/10.6026/97320630012001
work_keys_str_mv AT piecjonathan theluxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT pallezmarine theluxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT beyermarco theluxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT vogelgsangsusanne theluxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT hoffmannlucien theluxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT pasqualimatias theluxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT piecjonathan luxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT pallezmarine luxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT beyermarco luxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT vogelgsangsusanne luxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT hoffmannlucien luxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers
AT pasqualimatias luxembourgdatabaseoftrichothecenetypebfgraminearumandfculmorumproducers

Ejemplares similares