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Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers

Hepatitis is an emerging global threat to public health due to associated mortality, morbidity, cancer and HIV co-infection. Available diagnostics and therapeutics are inadequate to intercept the course and transmission of the disease. Antimicrobial peptides (AMP) are widely studied and broad-spectr...

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Autores principales: Mishra, Gunjan, Ananth, Vivek, Shelke, Kalpesh, Sehgal, Deepak, Valadi, Jayaraman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857459/
https://www.ncbi.nlm.nih.gov/pubmed/27212838
http://dx.doi.org/10.6026/97320630012012
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author Mishra, Gunjan
Ananth, Vivek
Shelke, Kalpesh
Sehgal, Deepak
Valadi, Jayaraman
author_facet Mishra, Gunjan
Ananth, Vivek
Shelke, Kalpesh
Sehgal, Deepak
Valadi, Jayaraman
author_sort Mishra, Gunjan
collection PubMed
description Hepatitis is an emerging global threat to public health due to associated mortality, morbidity, cancer and HIV co-infection. Available diagnostics and therapeutics are inadequate to intercept the course and transmission of the disease. Antimicrobial peptides (AMP) are widely studied and broad-spectrum host defense peptides are investigated as a targeted anti-viral. Therefore, it is of interest to describe the supervised identification of anti-hepatitis peptides. We used a hybrid Support Vector Machine (SVM) with Ant Colony Optimization (ACO) algorithm for simultaneous classification and domain feature selection. The described model shows a 10 fold cross-validation accuracy of 94 percent. This is a reliable and a useful tool for the prediction and identification of hepatitis specific drug activity
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spelling pubmed-48574592016-05-20 Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers Mishra, Gunjan Ananth, Vivek Shelke, Kalpesh Sehgal, Deepak Valadi, Jayaraman Bioinformation Prediction Model Hepatitis is an emerging global threat to public health due to associated mortality, morbidity, cancer and HIV co-infection. Available diagnostics and therapeutics are inadequate to intercept the course and transmission of the disease. Antimicrobial peptides (AMP) are widely studied and broad-spectrum host defense peptides are investigated as a targeted anti-viral. Therefore, it is of interest to describe the supervised identification of anti-hepatitis peptides. We used a hybrid Support Vector Machine (SVM) with Ant Colony Optimization (ACO) algorithm for simultaneous classification and domain feature selection. The described model shows a 10 fold cross-validation accuracy of 94 percent. This is a reliable and a useful tool for the prediction and identification of hepatitis specific drug activity Biomedical Informatics 2016-01-31 /pmc/articles/PMC4857459/ /pubmed/27212838 http://dx.doi.org/10.6026/97320630012012 Text en © 2016 Biomedical Informatics This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Prediction Model
Mishra, Gunjan
Ananth, Vivek
Shelke, Kalpesh
Sehgal, Deepak
Valadi, Jayaraman
Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_full Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_fullStr Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_full_unstemmed Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_short Classification of anti hepatitis peptides using Support Vector Machine with hybrid Ant Colony OptimizationThe Luxembourg database of trichothecene type B F. graminearum and F. culmorum producers
title_sort classification of anti hepatitis peptides using support vector machine with hybrid ant colony optimizationthe luxembourg database of trichothecene type b f. graminearum and f. culmorum producers
topic Prediction Model
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857459/
https://www.ncbi.nlm.nih.gov/pubmed/27212838
http://dx.doi.org/10.6026/97320630012012
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