MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis

Network analysis can make variant analysis better. There are existing tools like HotNet2 and dmGWAS that can provide various analytical methods. We developed a prototype of a pipeline called MetaNetVar that allows execution of multiple tools. The code is published at https://github.com/NCBI-Hackatho...

Descripción completa

Detalles Bibliográficos
Autores principales: Moyer, Eric, Hagenauer, Megan, Lesko, Matthew, Francis, Felix, Rodriguez, Oscar, Nagarajan, Vijayaraj, Huser, Vojtech, Busby, Ben
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2016
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857755/
https://www.ncbi.nlm.nih.gov/pubmed/27158457
http://dx.doi.org/10.12688/f1000research.8288.1
Descripción
Sumario:Network analysis can make variant analysis better. There are existing tools like HotNet2 and dmGWAS that can provide various analytical methods. We developed a prototype of a pipeline called MetaNetVar that allows execution of multiple tools. The code is published at https://github.com/NCBI-Hackathons/Network_SNPs. A working prototype is published as an Amazon Machine Image - ami-4510312f .

Ejemplares similares