Cargando…

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

Community-run, formal evaluations and manually annotated text corpora are critically important for advancing biomedical text-mining research. Recently in BioCreative V, a new challenge was organized for the tasks of disease named entity recognition (DNER) and chemical-induced disease (CID) relation...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Jiao, Sun, Yueping, Johnson, Robin J., Sciaky, Daniela, Wei, Chih-Hsuan, Leaman, Robert, Davis, Allan Peter, Mattingly, Carolyn J., Wiegers, Thomas C., Lu, Zhiyong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860626/ https://www.ncbi.nlm.nih.gov/pubmed/27161011 http://dx.doi.org/10.1093/database/baw068

Ejemplares similares

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task
por: Wei, Chih-Hsuan, et al.
Publicado: (2016)

BioCreative-2012 Virtual Issue
por: Wu, Cathy H., et al.
Publicado: (2012)

BC4GO: a full-text corpus for the BioCreative IV GO task
por: Van Auken, Kimberly, et al.
Publicado: (2014)

The gene normalization task in BioCreative III
por: Lu, Zhiyong, et al.
Publicado: (2011)

BioCreative-IV virtual issue
por: Arighi, Cecilia N., et al.
Publicado: (2014)

BioCreative III interactive task: an overview
por: Arighi, Cecilia N, et al.
Publicado: (2011)

Overview of the interactive task in BioCreative V
por: Wang, Qinghua, et al.
Publicado: (2016)

Overview of the gene ontology task at BioCreative IV
por: Mao, Yuqing, et al.
Publicado: (2014)

Overview of BioCreative II gene normalization
por: Morgan, Alexander A, et al.
Publicado: (2008)

Overview of the BioCreative III Workshop
por: Arighi, Cecilia N, et al.
Publicado: (2011)

HITSZ_CDR: an end-to-end chemical and disease relation extraction system for BioCreative V
por: Li, Haodi, et al.
Publicado: (2016)

OntoGene in BioCreative II
por: Rinaldi, Fabio, et al.
Publicado: (2008)

Overview of the BioCreative VI text-mining services for Kinome Curation Track
por: Gobeill, Julien, et al.
Publicado: (2018)

Using the OntoGene pipeline for the triage task of BioCreative 2012
por: Rinaldi, Fabio, et al.
Publicado: (2013)

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task
por: Arighi, Cecilia N., et al.
Publicado: (2013)

BioLMiner and the BioCreative II.5 challenge
por: Chen, Yifei, et al.
Publicado: (2010)

Overview of the protein-protein interaction annotation extraction task of BioCreative II
por: Krallinger, Martin, et al.
Publicado: (2008)

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID
por: Kim, Sun, et al.
Publicado: (2016)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
por: Krallinger, Martin, et al.
Publicado: (2011)

Overview of BioCreative II gene mention recognition
por: Smith, Larry, et al.
Publicado: (2008)

BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics
por: Chen, Qingyu, et al.
Publicado: (2018)

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II
por: Lu, Zhiyong, et al.
Publicado: (2012)

Selected articles from the BioCreative/OHNLP challenge 2018
por: Liu, Sijia, et al.
Publicado: (2019)

LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task
por: Warikoo, Neha, et al.
Publicado: (2018)

Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition
por: Weissenbacher, Davy, et al.
Publicado: (2023)

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine
por: Islamaj Doğan, Rezarta, et al.
Publicado: (2019)

Evaluation of BioCreAtIvE assessment of task 2
por: Blaschke, Christian, et al.
Publicado: (2005)

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge
por: Krallinger, Martin, et al.
Publicado: (2008)

PIPE: a protein–protein interaction passage extraction module for BioCreative challenge
por: Chang, Yung-Chun, et al.
Publicado: (2016)

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language
por: Rinaldi, Fabio, et al.
Publicado: (2016)

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases
por: Chatr-aryamontri, Andrew, et al.
Publicado: (2011)

The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track
por: Madan, Sumit, et al.
Publicado: (2016)

Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII
por: Chatr-aryamontri, Andrew, et al.
Publicado: (2022)

How to link ontologies and protein–protein interactions to literature: text-mining approaches and the BioCreative experience
por: Krallinger, Martin, et al.
Publicado: (2012)

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge
por: Pérez-Pérez, Martin, et al.
Publicado: (2016)

Overview of BioCreAtIvE task 1B: normalized gene lists
por: Hirschman, Lynette, et al.
Publicado: (2005)

Data preparation and interannotator agreement: BioCreAtIvE Task 1B
por: Colosimo, Marc E, et al.
Publicado: (2005)

BioCreAtIvE Task 1A: gene mention finding evaluation
por: Yeh, Alexander, et al.
Publicado: (2005)

Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations
por: Miranda-Escalada, Antonio, et al.
Publicado: (2023)

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track
por: Madan, Sumit, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_20jnucai8j46j56vafa87c2gjr