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MycoDB, a global database of plant response to mycorrhizal fungi
Plants form belowground associations with mycorrhizal fungi in one of the most common symbioses on Earth. However, few large-scale generalizations exist for the structure and function of mycorrhizal symbioses, as the nature of this relationship varies from mutualistic to parasitic and is largely con...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4862322/ https://www.ncbi.nlm.nih.gov/pubmed/27163938 http://dx.doi.org/10.1038/sdata.2016.28 |
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author | Chaudhary, V. Bala Rúa, Megan A. Antoninka, Anita Bever, James D. Cannon, Jeffery Craig, Ashley Duchicela, Jessica Frame, Alicia Gardes, Monique Gehring, Catherine Ha, Michelle Hart, Miranda Hopkins, Jacob Ji, Baoming Johnson, Nancy Collins Kaonongbua, Wittaya Karst, Justine Koide, Roger T. Lamit, Louis J. Meadow, James Milligan, Brook G. Moore, John C. Pendergast IV, Thomas H. Piculell, Bridget Ramsby, Blake Simard, Suzanne Shrestha, Shubha Umbanhowar, James Viechtbauer, Wolfgang Walters, Lawrence Wilson, Gail W. T. Zee, Peter C. Hoeksema, Jason D. |
author_facet | Chaudhary, V. Bala Rúa, Megan A. Antoninka, Anita Bever, James D. Cannon, Jeffery Craig, Ashley Duchicela, Jessica Frame, Alicia Gardes, Monique Gehring, Catherine Ha, Michelle Hart, Miranda Hopkins, Jacob Ji, Baoming Johnson, Nancy Collins Kaonongbua, Wittaya Karst, Justine Koide, Roger T. Lamit, Louis J. Meadow, James Milligan, Brook G. Moore, John C. Pendergast IV, Thomas H. Piculell, Bridget Ramsby, Blake Simard, Suzanne Shrestha, Shubha Umbanhowar, James Viechtbauer, Wolfgang Walters, Lawrence Wilson, Gail W. T. Zee, Peter C. Hoeksema, Jason D. |
author_sort | Chaudhary, V. Bala |
collection | PubMed |
description | Plants form belowground associations with mycorrhizal fungi in one of the most common symbioses on Earth. However, few large-scale generalizations exist for the structure and function of mycorrhizal symbioses, as the nature of this relationship varies from mutualistic to parasitic and is largely context-dependent. We announce the public release of MycoDB, a database of 4,010 studies (from 438 unique publications) to aid in multi-factor meta-analyses elucidating the ecological and evolutionary context in which mycorrhizal fungi alter plant productivity. Over 10 years with nearly 80 collaborators, we compiled data on the response of plant biomass to mycorrhizal fungal inoculation, including meta-analysis metrics and 24 additional explanatory variables that describe the biotic and abiotic context of each study. We also include phylogenetic trees for all plants and fungi in the database. To our knowledge, MycoDB is the largest ecological meta-analysis database. We aim to share these data to highlight significant gaps in mycorrhizal research and encourage synthesis to explore the ecological and evolutionary generalities that govern mycorrhizal functioning in ecosystems. |
format | Online Article Text |
id | pubmed-4862322 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48623222016-06-08 MycoDB, a global database of plant response to mycorrhizal fungi Chaudhary, V. Bala Rúa, Megan A. Antoninka, Anita Bever, James D. Cannon, Jeffery Craig, Ashley Duchicela, Jessica Frame, Alicia Gardes, Monique Gehring, Catherine Ha, Michelle Hart, Miranda Hopkins, Jacob Ji, Baoming Johnson, Nancy Collins Kaonongbua, Wittaya Karst, Justine Koide, Roger T. Lamit, Louis J. Meadow, James Milligan, Brook G. Moore, John C. Pendergast IV, Thomas H. Piculell, Bridget Ramsby, Blake Simard, Suzanne Shrestha, Shubha Umbanhowar, James Viechtbauer, Wolfgang Walters, Lawrence Wilson, Gail W. T. Zee, Peter C. Hoeksema, Jason D. Sci Data Data Descriptor Plants form belowground associations with mycorrhizal fungi in one of the most common symbioses on Earth. However, few large-scale generalizations exist for the structure and function of mycorrhizal symbioses, as the nature of this relationship varies from mutualistic to parasitic and is largely context-dependent. We announce the public release of MycoDB, a database of 4,010 studies (from 438 unique publications) to aid in multi-factor meta-analyses elucidating the ecological and evolutionary context in which mycorrhizal fungi alter plant productivity. Over 10 years with nearly 80 collaborators, we compiled data on the response of plant biomass to mycorrhizal fungal inoculation, including meta-analysis metrics and 24 additional explanatory variables that describe the biotic and abiotic context of each study. We also include phylogenetic trees for all plants and fungi in the database. To our knowledge, MycoDB is the largest ecological meta-analysis database. We aim to share these data to highlight significant gaps in mycorrhizal research and encourage synthesis to explore the ecological and evolutionary generalities that govern mycorrhizal functioning in ecosystems. Nature Publishing Group 2016-05-10 /pmc/articles/PMC4862322/ /pubmed/27163938 http://dx.doi.org/10.1038/sdata.2016.28 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse. |
spellingShingle | Data Descriptor Chaudhary, V. Bala Rúa, Megan A. Antoninka, Anita Bever, James D. Cannon, Jeffery Craig, Ashley Duchicela, Jessica Frame, Alicia Gardes, Monique Gehring, Catherine Ha, Michelle Hart, Miranda Hopkins, Jacob Ji, Baoming Johnson, Nancy Collins Kaonongbua, Wittaya Karst, Justine Koide, Roger T. Lamit, Louis J. Meadow, James Milligan, Brook G. Moore, John C. Pendergast IV, Thomas H. Piculell, Bridget Ramsby, Blake Simard, Suzanne Shrestha, Shubha Umbanhowar, James Viechtbauer, Wolfgang Walters, Lawrence Wilson, Gail W. T. Zee, Peter C. Hoeksema, Jason D. MycoDB, a global database of plant response to mycorrhizal fungi |
title | MycoDB, a global database of plant response to mycorrhizal fungi |
title_full | MycoDB, a global database of plant response to mycorrhizal fungi |
title_fullStr | MycoDB, a global database of plant response to mycorrhizal fungi |
title_full_unstemmed | MycoDB, a global database of plant response to mycorrhizal fungi |
title_short | MycoDB, a global database of plant response to mycorrhizal fungi |
title_sort | mycodb, a global database of plant response to mycorrhizal fungi |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4862322/ https://www.ncbi.nlm.nih.gov/pubmed/27163938 http://dx.doi.org/10.1038/sdata.2016.28 |
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