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Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study
Ion transports through ion channels, biological nanopores, are essential for life: Living cells generate electrical signals by utilizing ion permeation through channels. The measured current-voltage (i-V) relations through most ion channels are sublinear, however, its physical meaning is still elusi...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863172/ https://www.ncbi.nlm.nih.gov/pubmed/27167118 http://dx.doi.org/10.1038/srep25750 |
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author | Sumikama, Takashi |
author_facet | Sumikama, Takashi |
author_sort | Sumikama, Takashi |
collection | PubMed |
description | Ion transports through ion channels, biological nanopores, are essential for life: Living cells generate electrical signals by utilizing ion permeation through channels. The measured current-voltage (i-V) relations through most ion channels are sublinear, however, its physical meaning is still elusive. Here we calculated the i-V curves through anion-doped carbon nanotubes, a model of an ion channel, using molecular dynamics simulation. It was found the i-V curve reflects the physical origin of the rate-determining step: the i-V curve is sublinear when the permeation is entropy bottlenecked, while it is superlinear in the case of the energy bottlenecked permeation. Based on this finding, we discuss the relation between the molecular mechanism of ion permeation through the biological K(+) channels and the shape of the i-V curves through them. This work also provides a clue for a novel design of nanopores that show current rectification. |
format | Online Article Text |
id | pubmed-4863172 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48631722016-05-23 Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study Sumikama, Takashi Sci Rep Article Ion transports through ion channels, biological nanopores, are essential for life: Living cells generate electrical signals by utilizing ion permeation through channels. The measured current-voltage (i-V) relations through most ion channels are sublinear, however, its physical meaning is still elusive. Here we calculated the i-V curves through anion-doped carbon nanotubes, a model of an ion channel, using molecular dynamics simulation. It was found the i-V curve reflects the physical origin of the rate-determining step: the i-V curve is sublinear when the permeation is entropy bottlenecked, while it is superlinear in the case of the energy bottlenecked permeation. Based on this finding, we discuss the relation between the molecular mechanism of ion permeation through the biological K(+) channels and the shape of the i-V curves through them. This work also provides a clue for a novel design of nanopores that show current rectification. Nature Publishing Group 2016-05-11 /pmc/articles/PMC4863172/ /pubmed/27167118 http://dx.doi.org/10.1038/srep25750 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Sumikama, Takashi Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study |
title | Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study |
title_full | Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study |
title_fullStr | Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study |
title_full_unstemmed | Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study |
title_short | Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study |
title_sort | origin of the shape of current-voltage curve through nanopores: a molecular dynamics study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863172/ https://www.ncbi.nlm.nih.gov/pubmed/27167118 http://dx.doi.org/10.1038/srep25750 |
work_keys_str_mv | AT sumikamatakashi originoftheshapeofcurrentvoltagecurvethroughnanoporesamoleculardynamicsstudy |