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Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale
BACKGROUND: Detection and quantitation of BCR-ABL1 transcripts are crucial for managing patients with chronic myeloid leukemia (CML). Although real-time quantitative polymerase chain reaction (RT-qPCR) can be measured on an International Scale (IS), this has not become fully universal. By using a WH...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4864793/ https://www.ncbi.nlm.nih.gov/pubmed/27247866 http://dx.doi.org/10.1186/s40064-016-2258-6 |
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author | Yoshida, Chikashi Nakamae, Hirohisa Fletcher, Linda Koga, Daisuke Sogabe, Takayuki Matsumura, Itaru Kanakura, Yuzuru Branford, Susan Naoe, Tomoki |
author_facet | Yoshida, Chikashi Nakamae, Hirohisa Fletcher, Linda Koga, Daisuke Sogabe, Takayuki Matsumura, Itaru Kanakura, Yuzuru Branford, Susan Naoe, Tomoki |
author_sort | Yoshida, Chikashi |
collection | PubMed |
description | BACKGROUND: Detection and quantitation of BCR-ABL1 transcripts are crucial for managing patients with chronic myeloid leukemia (CML). Although real-time quantitative polymerase chain reaction (RT-qPCR) can be measured on an International Scale (IS), this has not become fully universal. By using a WHO international standard panel established for calibrating secondary standards based on the IS, we have previously developed an RT-qPCR kit, ODK-1201, for quantification of major BCR-ABL1. RESULTS: In this study, the reliability of kit-specific conversion factor 1.12 was validated by exchanging patients’ samples between three local clinical laboratories and a reference laboratory. The mean bias of the local method after IS conversion was 1.6 fold lower than the reference method. The clinically-useful sensitivity of the kit was further evaluated for monitoring patients with deep molecular response. Based on the correlation of the IS values between ODK-1201 and the reference laboratory method, the detection level of the kit was estimated as 0.0032 % BCR-ABL1(IS). CONCLUSIONS: ODK-1201 is a highly sensitive one-step RT-qPCR system for detecting BCR-ABL1 on the IS in 2 h after RNA extraction, thus contributing to standardization of molecular monitoring in CML. |
format | Online Article Text |
id | pubmed-4864793 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-48647932016-05-31 Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale Yoshida, Chikashi Nakamae, Hirohisa Fletcher, Linda Koga, Daisuke Sogabe, Takayuki Matsumura, Itaru Kanakura, Yuzuru Branford, Susan Naoe, Tomoki Springerplus Research BACKGROUND: Detection and quantitation of BCR-ABL1 transcripts are crucial for managing patients with chronic myeloid leukemia (CML). Although real-time quantitative polymerase chain reaction (RT-qPCR) can be measured on an International Scale (IS), this has not become fully universal. By using a WHO international standard panel established for calibrating secondary standards based on the IS, we have previously developed an RT-qPCR kit, ODK-1201, for quantification of major BCR-ABL1. RESULTS: In this study, the reliability of kit-specific conversion factor 1.12 was validated by exchanging patients’ samples between three local clinical laboratories and a reference laboratory. The mean bias of the local method after IS conversion was 1.6 fold lower than the reference method. The clinically-useful sensitivity of the kit was further evaluated for monitoring patients with deep molecular response. Based on the correlation of the IS values between ODK-1201 and the reference laboratory method, the detection level of the kit was estimated as 0.0032 % BCR-ABL1(IS). CONCLUSIONS: ODK-1201 is a highly sensitive one-step RT-qPCR system for detecting BCR-ABL1 on the IS in 2 h after RNA extraction, thus contributing to standardization of molecular monitoring in CML. Springer International Publishing 2016-05-10 /pmc/articles/PMC4864793/ /pubmed/27247866 http://dx.doi.org/10.1186/s40064-016-2258-6 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Yoshida, Chikashi Nakamae, Hirohisa Fletcher, Linda Koga, Daisuke Sogabe, Takayuki Matsumura, Itaru Kanakura, Yuzuru Branford, Susan Naoe, Tomoki Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale |
title | Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale |
title_full | Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale |
title_fullStr | Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale |
title_full_unstemmed | Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale |
title_short | Validation of a rapid one-step high sensitivity real-time quantitative PCR system for detecting major BCR-ABL1 mRNA on an International Scale |
title_sort | validation of a rapid one-step high sensitivity real-time quantitative pcr system for detecting major bcr-abl1 mrna on an international scale |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4864793/ https://www.ncbi.nlm.nih.gov/pubmed/27247866 http://dx.doi.org/10.1186/s40064-016-2258-6 |
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