Cargando…

Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies

Next-generation sequencing technologies have revolutionized the methods for studying microbial ecology by enabling high-resolution community profiling. However, the use of these technologies in unraveling the plant microbiome remains challenging. Many bacterial 16S rDNA primer pairs also exhibit hig...

Descripción completa

Detalles Bibliográficos
Autores principales:	Beckers, Bram, Op De Beeck, Michiel, Thijs, Sofie, Truyens, Sascha, Weyens, Nele, Boerjan, Wout, Vangronsveld, Jaco
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2016
Materias:	Plant Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4865482/ https://www.ncbi.nlm.nih.gov/pubmed/27242686 http://dx.doi.org/10.3389/fmicb.2016.00650

Ejemplares similares

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees
por: Beckers, Bram, et al.
Publicado: (2017)

Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys
por: Thijs, Sofie, et al.
Publicado: (2017)

Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies
por: Op De Beeck, Michiel, et al.
Publicado: (2014)

The Sycamore Maple Bacterial Culture Collection From a TNT Polluted Site Shows Novel Plant-Growth Promoting and Explosives Degrading Bacteria
por: Thijs, Sofie, et al.
Publicado: (2018)

The Effect of Syringic Acid and Phenoxy Herbicide 4-chloro-2-methylphenoxyacetic acid (MCPA) on Soil, Rhizosphere, and Plant Endosphere Microbiome
por: Mierzejewska, Elżbieta, et al.
Publicado: (2022)

Towards an Enhanced Understanding of Plant–Microbiome Interactions to Improve Phytoremediation: Engineering the Metaorganism
por: Thijs, Sofie, et al.
Publicado: (2016)

Potential for plant growth promotion by a consortium of stress-tolerant 2,4-dinitrotoluene-degrading bacteria: isolation and characterization of a military soil
por: Thijs, Sofie, et al.
Publicado: (2014)

Influence of Urbanization on Epiphytic Bacterial Communities of the Platanus × hispanica Tree Leaves in a Biennial Study
por: Espenshade, Jordan, et al.
Publicado: (2019)

Draft Genome Sequence of Raoultella ornithinolytica TNT, a Trinitrotoluene-Denitrating and Plant Growth-Promoting Strain Isolated from Explosive-Contaminated Soil
por: Thijs, Sofie, et al.
Publicado: (2014)

Exploitation of Endophytic Bacteria to Enhance the Phytoremediation Potential of the Wetland Helophyte Juncus acutus
por: Syranidou, Evdokia, et al.
Publicado: (2016)

Plant-associated bacteria and their role in the success or failure of metal phytoextraction projects: first observations of a field-related experiment
por: Weyens, Nele, et al.
Publicado: (2013)

Cultivar and Metal-Specific Effects of Endophytic Bacteria in Helianthus tuberosus Exposed to Cd and Zn
por: Montalbán, Blanca, et al.
Publicado: (2017)

Responses of the Endophytic Bacterial Communities of Juncus acutus to Pollution With Metals, Emerging Organic Pollutants and to Bioaugmentation With Indigenous Strains
por: Syranidou, Evdokia, et al.
Publicado: (2018)

Draft Genome Sequence of Rhodococcus erythropolis VSD3, a Diesel Fuel-Degrading and Plant Growth-Promoting Bacterium Isolated from Hedera helix Leaves
por: Stevens, Vincent, et al.
Publicado: (2017)

Draft Genome Sequence of Bacillus licheniformis VSD4, a Diesel Fuel–Degrading and Plant Growth–Promoting Phyllospheric Bacterium
por: Stevens, Vincent, et al.
Publicado: (2017)

Comparison of Microbial Community of Rhizosphere and Endosphere in Kiwifruit
por: Kim, Min-Jung, et al.
Publicado: (2019)

The Role of Plant–Microbe Interactions and Their Exploitation for Phytoremediation of Air Pollutants
por: Weyens, Nele, et al.
Publicado: (2015)

Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume
por: Gkorezis, Panagiotis, et al.
Publicado: (2015)

Fenton-Mediated Biodegradation of Chlorendic Acid – A Highly Chlorinated Organic Pollutant – By Fungi Isolated From a Polluted Site
por: Jambon, Inge, et al.
Publicado: (2019)

Bacterial communities in the rhizosphere, phyllosphere and endosphere of tomato plants
por: Dong, Chun-Juan, et al.
Publicado: (2019)

Microbial assemblages associated with the rhizosphere and endosphere of an herbage, Leymus chinensis
por: Chen, Jin, et al.
Publicado: (2020)

Tobacco, Sunflower and High Biomass SRC Clones Show Potential for Trace Metal Phytoextraction on a Moderately Contaminated Field Site in Belgium
por: Thijs, Sofie, et al.
Publicado: (2018)

Draft Genome Sequence of Acinetobacter calcoaceticus Strain GK1, a Hydrocarbon-Degrading Plant Growth-Promoting Rhizospheric Bacterium
por: Gkorezis, Panagiotis, et al.
Publicado: (2015)

Nanoparticle treatment of maize analyzed through the metatranscriptome: compromised nitrogen cycling, possible phytopathogen selection, and plant hormesis
por: Sillen, Wouter M. A., et al.
Publicado: (2020)

Draft Genome Sequence of Enterobacter aerogenes, a DDE-Degrading and Plant Growth-Promoting Strain Isolated from Cucurbita pepo
por: Eevers, Nele, et al.
Publicado: (2015)

Draft Genome Sequence of Methylobacterium radiotolerans, a DDE-Degrading and Plant Growth-Promoting Strain Isolated from Cucurbita pepo
por: Eevers, Nele, et al.
Publicado: (2015)

Sphingomonas taxi, Isolated from Cucurbita pepo, Proves to Be a DDE-Degrading and Plant Growth-Promoting Strain
por: Eevers, Nele, et al.
Publicado: (2015)

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere
por: Yu, Peng, et al.
Publicado: (2018)

Comparative Study of the Rhizosphere and Root Endosphere Microbiomes of Cholistan Desert Plants
por: Mukhtar, Salma, et al.
Publicado: (2021)

Draft Genome Sequence of Arthrobacter sp. Strain SPG23, a Hydrocarbon-Degrading and Plant Growth-Promoting Soil Bacterium
por: Gkorezis, Panagiotis, et al.
Publicado: (2015)

Draft Genome Sequence of Mesorhizobium sp. UFLA 01-765, a Multitolerant, Efficient Symbiont and Plant Growth-Promoting Strain Isolated from Zn-Mining Soil Using Leucaena leucocephala as a Trap Plant
por: Rangel, Wesley Melo, et al.
Publicado: (2016)

Distribution of Rhizosphere and Endosphere Fungi on the First-Class Endangered Plant Cypripedium japonicum
por: Gang, Geun-Hye, et al.
Publicado: (2017)

Niche differentiation in the rhizosphere and endosphere fungal microbiome of wild Paris polyphylla Sm.
por: Wang, Yan, et al.
Publicado: (2020)

Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection
por: Fernández-González, Antonio J., et al.
Publicado: (2019)

Cultivar-Dependent Variation of the Cotton Rhizosphere and Endosphere Microbiome Under Field Conditions
por: Wei, Feng, et al.
Publicado: (2019)

Fungal and metabolome diversity of the rhizosphere and endosphere of Phragmites australis in an AMD-polluted environment
por: Kalu, Chimdi Mang, et al.
Publicado: (2021)

Differentiation and Variability in the Rhizosphere and Endosphere Microbiomes of Healthy and Diseased Cotton (Gossypium sp.)
por: Shi, Yingwu, et al.
Publicado: (2021)

The Application of Organic Matter Temporarily Shifts Carrot Prokaryotic Communities in the Endosphere but Not in the Rhizosphere
por: Bagci, Irem, et al.
Publicado: (2023)

Draft Genome Sequence of Pantoea ananatis GB1, a Plant-Growth-Promoting Hydrocarbonoclastic Root Endophyte, Isolated at a Diesel Fuel Phytoremediation Site Planted with Populus
por: Gkorezis, Panagiotis, et al.
Publicado: (2016)

Draft Genome Sequence of Bacillus licheniformis Strain GB2, a Hydrocarbon-Degrading and Plant Growth-Promoting Soil Bacterium
por: Gkorezis, Panagiotis, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_9mjvg3f1ls7e2nuee95cmbuev4