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Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications

[Image: see text] Semiempirical (SE) methods can be derived from either Hartree–Fock or density functional theory by applying systematic approximations, leading to efficient computational schemes that are several orders of magnitude faster than ab initio calculations. Such numerical efficiency, in c...

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Autores principales: Christensen, Anders S., Kubař, Tomáš, Cui, Qiang, Elstner, Marcus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2016
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4867870/
https://www.ncbi.nlm.nih.gov/pubmed/27074247
http://dx.doi.org/10.1021/acs.chemrev.5b00584
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author Christensen, Anders S.
Kubař, Tomáš
Cui, Qiang
Elstner, Marcus
author_facet Christensen, Anders S.
Kubař, Tomáš
Cui, Qiang
Elstner, Marcus
author_sort Christensen, Anders S.
collection PubMed
description [Image: see text] Semiempirical (SE) methods can be derived from either Hartree–Fock or density functional theory by applying systematic approximations, leading to efficient computational schemes that are several orders of magnitude faster than ab initio calculations. Such numerical efficiency, in combination with modern computational facilities and linear scaling algorithms, allows application of SE methods to very large molecular systems with extensive conformational sampling. To reliably model the structure, dynamics, and reactivity of biological and other soft matter systems, however, good accuracy for the description of noncovalent interactions is required. In this review, we analyze popular SE approaches in terms of their ability to model noncovalent interactions, especially in the context of describing biomolecules, water solution, and organic materials. We discuss the most significant errors and proposed correction schemes, and we review their performance using standard test sets of molecular systems for quantum chemical methods and several recent applications. The general goal is to highlight both the value and limitations of SE methods and stimulate further developments that allow them to effectively complement ab initio methods in the analysis of complex molecular systems.
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spelling pubmed-48678702017-04-13 Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications Christensen, Anders S. Kubař, Tomáš Cui, Qiang Elstner, Marcus Chem Rev [Image: see text] Semiempirical (SE) methods can be derived from either Hartree–Fock or density functional theory by applying systematic approximations, leading to efficient computational schemes that are several orders of magnitude faster than ab initio calculations. Such numerical efficiency, in combination with modern computational facilities and linear scaling algorithms, allows application of SE methods to very large molecular systems with extensive conformational sampling. To reliably model the structure, dynamics, and reactivity of biological and other soft matter systems, however, good accuracy for the description of noncovalent interactions is required. In this review, we analyze popular SE approaches in terms of their ability to model noncovalent interactions, especially in the context of describing biomolecules, water solution, and organic materials. We discuss the most significant errors and proposed correction schemes, and we review their performance using standard test sets of molecular systems for quantum chemical methods and several recent applications. The general goal is to highlight both the value and limitations of SE methods and stimulate further developments that allow them to effectively complement ab initio methods in the analysis of complex molecular systems. American Chemical Society 2016-04-13 2016-05-11 /pmc/articles/PMC4867870/ /pubmed/27074247 http://dx.doi.org/10.1021/acs.chemrev.5b00584 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Christensen, Anders S.
Kubař, Tomáš
Cui, Qiang
Elstner, Marcus
Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications
title Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications
title_full Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications
title_fullStr Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications
title_full_unstemmed Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications
title_short Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications
title_sort semiempirical quantum mechanical methods for noncovalent interactions for chemical and biochemical applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4867870/
https://www.ncbi.nlm.nih.gov/pubmed/27074247
http://dx.doi.org/10.1021/acs.chemrev.5b00584
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