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Spatial organization of heterologous metabolic system in vivo based on TALE

For years, prokaryotic hosts have been widely applied in bio-engineering. However, the confined in vivo enzyme clustering of heterologous metabolic pathways in these organisms often results in low local concentrations of enzymes and substrates, leading to a low productive efficacy. We developed a ne...

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Autores principales: Zhu, Ling-yun, Qiu, Xin-yuan, Wu, Xiao-min, Zhang, Yuan, Zhu, Qian-hui, Fan, Dong-yu, Zhu, Chu-shu, Zhang, Dong-yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4869064/
https://www.ncbi.nlm.nih.gov/pubmed/27184291
http://dx.doi.org/10.1038/srep26065
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author Zhu, Ling-yun
Qiu, Xin-yuan
Zhu, Ling-yun
Wu, Xiao-min
Zhang, Yuan
Zhu, Qian-hui
Fan, Dong-yu
Zhu, Chu-shu
Zhang, Dong-yi
author_facet Zhu, Ling-yun
Qiu, Xin-yuan
Zhu, Ling-yun
Wu, Xiao-min
Zhang, Yuan
Zhu, Qian-hui
Fan, Dong-yu
Zhu, Chu-shu
Zhang, Dong-yi
author_sort Zhu, Ling-yun
collection PubMed
description For years, prokaryotic hosts have been widely applied in bio-engineering. However, the confined in vivo enzyme clustering of heterologous metabolic pathways in these organisms often results in low local concentrations of enzymes and substrates, leading to a low productive efficacy. We developed a new method to accelerate a heterologous metabolic system by integrating a transcription activator-like effector (TALE)-based scaffold system into an Escherichia coli chassis. The binding abilities of the TALEs to the artificial DNA scaffold were measured through ChIP-PCR. The effect of the system was determined through a split GFP study and validated through the heterologous production of indole-3-acetic acid (IAA) by incorporating TALE-fused IAA biosynthetic enzymes in E. coli. To the best of our knowledge, we are the first to use the TALE system as a scaffold for the spatial organization of bacterial metabolism. This technique might be used to establish multi-enzymatic reaction programs in a prokaryotic chassis for various applications.
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spelling pubmed-48690642016-06-01 Spatial organization of heterologous metabolic system in vivo based on TALE Zhu, Ling-yun Qiu, Xin-yuan Zhu, Ling-yun Wu, Xiao-min Zhang, Yuan Zhu, Qian-hui Fan, Dong-yu Zhu, Chu-shu Zhang, Dong-yi Sci Rep Article For years, prokaryotic hosts have been widely applied in bio-engineering. However, the confined in vivo enzyme clustering of heterologous metabolic pathways in these organisms often results in low local concentrations of enzymes and substrates, leading to a low productive efficacy. We developed a new method to accelerate a heterologous metabolic system by integrating a transcription activator-like effector (TALE)-based scaffold system into an Escherichia coli chassis. The binding abilities of the TALEs to the artificial DNA scaffold were measured through ChIP-PCR. The effect of the system was determined through a split GFP study and validated through the heterologous production of indole-3-acetic acid (IAA) by incorporating TALE-fused IAA biosynthetic enzymes in E. coli. To the best of our knowledge, we are the first to use the TALE system as a scaffold for the spatial organization of bacterial metabolism. This technique might be used to establish multi-enzymatic reaction programs in a prokaryotic chassis for various applications. Nature Publishing Group 2016-05-17 /pmc/articles/PMC4869064/ /pubmed/27184291 http://dx.doi.org/10.1038/srep26065 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Zhu, Ling-yun
Qiu, Xin-yuan
Zhu, Ling-yun
Wu, Xiao-min
Zhang, Yuan
Zhu, Qian-hui
Fan, Dong-yu
Zhu, Chu-shu
Zhang, Dong-yi
Spatial organization of heterologous metabolic system in vivo based on TALE
title Spatial organization of heterologous metabolic system in vivo based on TALE
title_full Spatial organization of heterologous metabolic system in vivo based on TALE
title_fullStr Spatial organization of heterologous metabolic system in vivo based on TALE
title_full_unstemmed Spatial organization of heterologous metabolic system in vivo based on TALE
title_short Spatial organization of heterologous metabolic system in vivo based on TALE
title_sort spatial organization of heterologous metabolic system in vivo based on tale
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4869064/
https://www.ncbi.nlm.nih.gov/pubmed/27184291
http://dx.doi.org/10.1038/srep26065
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