Cargando…

Circular RNA profile in gliomas revealed by identification tool UROBORUS

Recent evidence suggests that many endogenous circular RNAs (circRNAs) may play roles in biological processes. However, the expression patterns and functions of circRNAs in human diseases are not well understood. Computationally identifying circRNAs from total RNA-seq data is a primary step in study...

Descripción completa

Detalles Bibliográficos
Autores principales:	Song, Xiaofeng, Zhang, Naibo, Han, Ping, Moon, Byoung-San, Lai, Rose K., Wang, Kai, Lu, Wange
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4872085/ https://www.ncbi.nlm.nih.gov/pubmed/26873924 http://dx.doi.org/10.1093/nar/gkw075

Ejemplares similares

Comparison of circular RNA prediction tools
por: Hansen, Thomas B., et al.
Publicado: (2016)

CircularSTAR3D: a stack-based RNA 3D structural alignment tool for circular matching
por: Chen, Xiaoli, et al.
Publicado: (2023)

Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis
por: Atkinson, Joshua T, et al.
Publicado: (2018)

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes
por: Mall, Raghvendra, et al.
Publicado: (2018)

digit—a tool for detection and identification of genomic interchromosomal translocations
por: Meier, Richard, et al.
Publicado: (2017)

High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs
por: Panda, Amaresh C., et al.
Publicado: (2017)

NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision
por: Chuang, Trees-Juen, et al.
Publicado: (2016)

A transposase strategy for creating libraries of circularly permuted proteins
por: Mehta, Manan M., et al.
Publicado: (2012)

CRISPR-C: circularization of genes and chromosome by CRISPR in human cells
por: Møller, Henrik Devitt, et al.
Publicado: (2018)

Stabilization of RNA hairpins using non-nucleotide linkers and circularization
por: Kiliszek, Agnieszka, et al.
Publicado: (2017)

Proximity extension of circular DNA aptamers with real-time protein detection
por: Di Giusto, Daniel A., et al.
Publicado: (2005)

A multiplex platform for digital measurement of circular DNA reaction products
por: Björkesten, Johan, et al.
Publicado: (2020)

Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments
por: Dahl, Fredrik, et al.
Publicado: (2005)

A flexible and efficient template format for circular consensus sequencing and SNP detection
por: Travers, Kevin J., et al.
Publicado: (2010)

Synthetic circular RNA switches and circuits that control protein expression in mammalian cells
por: Kameda, Shigetoshi, et al.
Publicado: (2023)

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
por: Novák, Petr, et al.
Publicado: (2017)

Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing
por: Humphreys, David T, et al.
Publicado: (2019)

ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design
por: Severgnini, Marco, et al.
Publicado: (2009)

De novo assembly of genuine replication forks on an immobilized circular plasmid in Xenopus egg extracts
por: Zembutsu, Akiko, et al.
Publicado: (2006)

Sensitive fluorescence detection of nucleic acids based on isothermal circular strand-displacement polymerization reaction
por: Guo, Qiuping, et al.
Publicado: (2009)

COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features
por: Hu, Long, et al.
Publicado: (2017)

Identification of activated cryptic 5′ splice sites using structure profiles and odds measure
por: Tsai, Kun-Nan, et al.
Publicado: (2012)

Haplotyping by CRISPR-mediated DNA circularization (CRISPR-hapC) broadens allele-specific gene editing
por: Yu, Jiaying, et al.
Publicado: (2020)

A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field
por: Mehta, Devang, et al.
Publicado: (2019)

Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations
por: Ståhlberg, Anders, et al.
Publicado: (2011)

Intramolecular circularization increases efficiency of RNA sequencing and enables CLIP-Seq of nuclear RNA from human cells
por: Chu, Yongjun, et al.
Publicado: (2015)

STAR3D: a stack-based RNA 3D structural alignment tool
por: Ge, Ping, et al.
Publicado: (2015)

Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing
por: Suzuki, Hitoshi, et al.
Publicado: (2006)

Isothermal DNA amplification using the T4 replisome: circular nicking endonuclease-dependent amplification and primase-based whole-genome amplification
por: Schaerli, Yolanda, et al.
Publicado: (2010)

Whole transcriptome profiling reveals the RNA content of motor axons
por: Briese, Michael, et al.
Publicado: (2016)

TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data
por: Fimereli, Danai, et al.
Publicado: (2013)

capCLIP: a new tool to probe translational control in human cells through capture and identification of the eIF4E–mRNA interactome
por: Jensen, Kirk B, et al.
Publicado: (2021)

Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble
por: Rogers, Emily, et al.
Publicado: (2014)

RATT: Rapid Annotation Transfer Tool
por: Otto, Thomas D., et al.
Publicado: (2011)

SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing
por: Flemington, Erik K, et al.
Publicado: (2023)

A pHMM-ANN based discriminative approach to promoter identification in prokaryote genomic contexts
por: Mann, Scott, et al.
Publicado: (2007)

Road blocks on paleogenomes—polymerase extension profiling reveals the frequency of blocking lesions in ancient DNA
por: Heyn, Patricia, et al.
Publicado: (2010)

Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains
por: Van der Aa, Niels, et al.
Publicado: (2013)

Protect-seq: genome-wide profiling of nuclease inaccessible domains reveals physical properties of chromatin
por: Spracklin, George, et al.
Publicado: (2020)

TeloTool: a new tool for telomere length measurement from terminal restriction fragment analysis with improved probe intensity correction
por: Göhring, Janett, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_imd2bm60kq75amhr018uu21mab