Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles

We present here raw trajectories of molecular dynamics simulations for nucleosome with linker DNA strands as well as minimalistic nucleosome core particle model. The simulations were done in explicit solvent using CHARMM36 force field. We used this data in the research article Shaytan et al., 2016 [...

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Detalles Bibliográficos
Autores principales: Shaytan, Alexey K., Armeev, Grigoriy A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Data Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4872717/
https://www.ncbi.nlm.nih.gov/pubmed/27222871
http://dx.doi.org/10.1016/j.dib.2016.04.073
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author Shaytan, Alexey K.
Armeev, Grigoriy A.
Goncearenco, Alexander
Zhurkin, Victor B.
Landsman, David
Panchenko, Anna R.
author_facet Shaytan, Alexey K.
Armeev, Grigoriy A.
Goncearenco, Alexander
Zhurkin, Victor B.
Landsman, David
Panchenko, Anna R.
author_sort Shaytan, Alexey K.
collection PubMed
description We present here raw trajectories of molecular dynamics simulations for nucleosome with linker DNA strands as well as minimalistic nucleosome core particle model. The simulations were done in explicit solvent using CHARMM36 force field. We used this data in the research article Shaytan et al., 2016 [1]. The trajectory files are supplemented by TCL scripts providing advanced visualization capabilities.
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spelling pubmed-48727172016-05-24 Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles Shaytan, Alexey K. Armeev, Grigoriy A. Goncearenco, Alexander Zhurkin, Victor B. Landsman, David Panchenko, Anna R. Data Brief Data Article We present here raw trajectories of molecular dynamics simulations for nucleosome with linker DNA strands as well as minimalistic nucleosome core particle model. The simulations were done in explicit solvent using CHARMM36 force field. We used this data in the research article Shaytan et al., 2016 [1]. The trajectory files are supplemented by TCL scripts providing advanced visualization capabilities. Elsevier 2016-05-06 /pmc/articles/PMC4872717/ /pubmed/27222871 http://dx.doi.org/10.1016/j.dib.2016.04.073 Text en http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Shaytan, Alexey K.
Armeev, Grigoriy A.
Goncearenco, Alexander
Zhurkin, Victor B.
Landsman, David
Panchenko, Anna R.
Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
title Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
title_full Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
title_fullStr Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
title_full_unstemmed Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
title_short Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
title_sort trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4872717/
https://www.ncbi.nlm.nih.gov/pubmed/27222871
http://dx.doi.org/10.1016/j.dib.2016.04.073
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