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Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems
Adaptation is a crucial biological function possessed by many sensory systems. Early work has shown that some influential equilibrium models can achieve accurate adaptation. However, recent studies indicate that there are close relationships between adaptation and nonequilibrium. In this paper, we p...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873145/ https://www.ncbi.nlm.nih.gov/pubmed/27195482 http://dx.doi.org/10.1371/journal.pone.0155838 |
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author | Jia, Chen Qian, Minping |
author_facet | Jia, Chen Qian, Minping |
author_sort | Jia, Chen |
collection | PubMed |
description | Adaptation is a crucial biological function possessed by many sensory systems. Early work has shown that some influential equilibrium models can achieve accurate adaptation. However, recent studies indicate that there are close relationships between adaptation and nonequilibrium. In this paper, we provide an explanation of these two seemingly contradictory results based on Markov models with relatively simple networks. We show that as the nonequilibrium driving becomes stronger, the system under consideration will undergo a phase transition along a fixed direction: from non-adaptation to simple adaptation then to oscillatory adaptation, while the transition in the opposite direction is forbidden. This indicates that although adaptation may be observed in equilibrium systems, it tends to occur in systems far away from equilibrium. In addition, we find that nonequilibrium will improve the performance of adaptation by enhancing the adaptation efficiency. All these results provide a deeper insight into the connection between adaptation and nonequilibrium. Finally, we use a more complicated network model of bacterial chemotaxis to validate the main results of this paper. |
format | Online Article Text |
id | pubmed-4873145 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-48731452016-06-09 Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems Jia, Chen Qian, Minping PLoS One Research Article Adaptation is a crucial biological function possessed by many sensory systems. Early work has shown that some influential equilibrium models can achieve accurate adaptation. However, recent studies indicate that there are close relationships between adaptation and nonequilibrium. In this paper, we provide an explanation of these two seemingly contradictory results based on Markov models with relatively simple networks. We show that as the nonequilibrium driving becomes stronger, the system under consideration will undergo a phase transition along a fixed direction: from non-adaptation to simple adaptation then to oscillatory adaptation, while the transition in the opposite direction is forbidden. This indicates that although adaptation may be observed in equilibrium systems, it tends to occur in systems far away from equilibrium. In addition, we find that nonequilibrium will improve the performance of adaptation by enhancing the adaptation efficiency. All these results provide a deeper insight into the connection between adaptation and nonequilibrium. Finally, we use a more complicated network model of bacterial chemotaxis to validate the main results of this paper. Public Library of Science 2016-05-19 /pmc/articles/PMC4873145/ /pubmed/27195482 http://dx.doi.org/10.1371/journal.pone.0155838 Text en © 2016 Jia, Qian http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Jia, Chen Qian, Minping Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems |
title | Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems |
title_full | Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems |
title_fullStr | Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems |
title_full_unstemmed | Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems |
title_short | Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems |
title_sort | nonequilibrium enhances adaptation efficiency of stochastic biochemical systems |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873145/ https://www.ncbi.nlm.nih.gov/pubmed/27195482 http://dx.doi.org/10.1371/journal.pone.0155838 |
work_keys_str_mv | AT jiachen nonequilibriumenhancesadaptationefficiencyofstochasticbiochemicalsystems AT qianminping nonequilibriumenhancesadaptationefficiencyofstochasticbiochemicalsystems |