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Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)

PREMISE OF THE STUDY: Microsatellite loci were developed for a woody deciduous liana, Sargentodoxa cuneata (Lardizabalaceae), to help infer the evolutionary histories of ancient monotypic genera in subtropical China. METHODS AND RESULTS: Using next-generation sequencing (Illumina MiSeq) technology,...

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Autores principales: Sun, Zhi-Xia, Ye, Lin-Jiang, Zhang, Fei, Hu, Wan, Fan, Deng-Mei, Zhang, Zhi-Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873275/
https://www.ncbi.nlm.nih.gov/pubmed/27213128
http://dx.doi.org/10.3732/apps.1600003
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author Sun, Zhi-Xia
Ye, Lin-Jiang
Zhang, Fei
Hu, Wan
Fan, Deng-Mei
Zhang, Zhi-Yong
author_facet Sun, Zhi-Xia
Ye, Lin-Jiang
Zhang, Fei
Hu, Wan
Fan, Deng-Mei
Zhang, Zhi-Yong
author_sort Sun, Zhi-Xia
collection PubMed
description PREMISE OF THE STUDY: Microsatellite loci were developed for a woody deciduous liana, Sargentodoxa cuneata (Lardizabalaceae), to help infer the evolutionary histories of ancient monotypic genera in subtropical China. METHODS AND RESULTS: Using next-generation sequencing (Illumina MiSeq) technology, 21 polymorphic primer sets were identified in three wild populations. The number of alleles per locus ranged from one to seven. The expected and observed heterozygosities varied from 0 to 0.788 and 0 to 0.917, respectively. Transferability analyses were performed in Stauntonia chinensis, Akebia trifoliata, and A. quinata. Eighteen (85.7%), 18 (85.7%), and 17 (81.0%) markers were successfully amplified, respectively. CONCLUSIONS: The newly developed markers will facilitate further studies on genetic diversity and phylogeographic patterns throughout the distributional range of S. cuneata. This set of microsatellite primers represents the second report on molecular markers in Lardizabalaceae.
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spelling pubmed-48732752016-05-20 Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) Sun, Zhi-Xia Ye, Lin-Jiang Zhang, Fei Hu, Wan Fan, Deng-Mei Zhang, Zhi-Yong Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite loci were developed for a woody deciduous liana, Sargentodoxa cuneata (Lardizabalaceae), to help infer the evolutionary histories of ancient monotypic genera in subtropical China. METHODS AND RESULTS: Using next-generation sequencing (Illumina MiSeq) technology, 21 polymorphic primer sets were identified in three wild populations. The number of alleles per locus ranged from one to seven. The expected and observed heterozygosities varied from 0 to 0.788 and 0 to 0.917, respectively. Transferability analyses were performed in Stauntonia chinensis, Akebia trifoliata, and A. quinata. Eighteen (85.7%), 18 (85.7%), and 17 (81.0%) markers were successfully amplified, respectively. CONCLUSIONS: The newly developed markers will facilitate further studies on genetic diversity and phylogeographic patterns throughout the distributional range of S. cuneata. This set of microsatellite primers represents the second report on molecular markers in Lardizabalaceae. Botanical Society of America 2016-05-09 /pmc/articles/PMC4873275/ /pubmed/27213128 http://dx.doi.org/10.3732/apps.1600003 Text en © 2016 Sun et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Sun, Zhi-Xia
Ye, Lin-Jiang
Zhang, Fei
Hu, Wan
Fan, Deng-Mei
Zhang, Zhi-Yong
Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)
title Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)
title_full Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)
title_fullStr Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)
title_full_unstemmed Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)
title_short Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)
title_sort development of microsatellite markers for sargentodoxa cuneata (lardizabalaceae) using next-generation sequencing technology(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873275/
https://www.ncbi.nlm.nih.gov/pubmed/27213128
http://dx.doi.org/10.3732/apps.1600003
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