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Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1)
PREMISE OF THE STUDY: Microsatellite loci were developed for a woody deciduous liana, Sargentodoxa cuneata (Lardizabalaceae), to help infer the evolutionary histories of ancient monotypic genera in subtropical China. METHODS AND RESULTS: Using next-generation sequencing (Illumina MiSeq) technology,...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873275/ https://www.ncbi.nlm.nih.gov/pubmed/27213128 http://dx.doi.org/10.3732/apps.1600003 |
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author | Sun, Zhi-Xia Ye, Lin-Jiang Zhang, Fei Hu, Wan Fan, Deng-Mei Zhang, Zhi-Yong |
author_facet | Sun, Zhi-Xia Ye, Lin-Jiang Zhang, Fei Hu, Wan Fan, Deng-Mei Zhang, Zhi-Yong |
author_sort | Sun, Zhi-Xia |
collection | PubMed |
description | PREMISE OF THE STUDY: Microsatellite loci were developed for a woody deciduous liana, Sargentodoxa cuneata (Lardizabalaceae), to help infer the evolutionary histories of ancient monotypic genera in subtropical China. METHODS AND RESULTS: Using next-generation sequencing (Illumina MiSeq) technology, 21 polymorphic primer sets were identified in three wild populations. The number of alleles per locus ranged from one to seven. The expected and observed heterozygosities varied from 0 to 0.788 and 0 to 0.917, respectively. Transferability analyses were performed in Stauntonia chinensis, Akebia trifoliata, and A. quinata. Eighteen (85.7%), 18 (85.7%), and 17 (81.0%) markers were successfully amplified, respectively. CONCLUSIONS: The newly developed markers will facilitate further studies on genetic diversity and phylogeographic patterns throughout the distributional range of S. cuneata. This set of microsatellite primers represents the second report on molecular markers in Lardizabalaceae. |
format | Online Article Text |
id | pubmed-4873275 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-48732752016-05-20 Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) Sun, Zhi-Xia Ye, Lin-Jiang Zhang, Fei Hu, Wan Fan, Deng-Mei Zhang, Zhi-Yong Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite loci were developed for a woody deciduous liana, Sargentodoxa cuneata (Lardizabalaceae), to help infer the evolutionary histories of ancient monotypic genera in subtropical China. METHODS AND RESULTS: Using next-generation sequencing (Illumina MiSeq) technology, 21 polymorphic primer sets were identified in three wild populations. The number of alleles per locus ranged from one to seven. The expected and observed heterozygosities varied from 0 to 0.788 and 0 to 0.917, respectively. Transferability analyses were performed in Stauntonia chinensis, Akebia trifoliata, and A. quinata. Eighteen (85.7%), 18 (85.7%), and 17 (81.0%) markers were successfully amplified, respectively. CONCLUSIONS: The newly developed markers will facilitate further studies on genetic diversity and phylogeographic patterns throughout the distributional range of S. cuneata. This set of microsatellite primers represents the second report on molecular markers in Lardizabalaceae. Botanical Society of America 2016-05-09 /pmc/articles/PMC4873275/ /pubmed/27213128 http://dx.doi.org/10.3732/apps.1600003 Text en © 2016 Sun et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Sun, Zhi-Xia Ye, Lin-Jiang Zhang, Fei Hu, Wan Fan, Deng-Mei Zhang, Zhi-Yong Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) |
title | Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) |
title_full | Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) |
title_fullStr | Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) |
title_full_unstemmed | Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) |
title_short | Development of microsatellite markers for Sargentodoxa cuneata (Lardizabalaceae) using next-generation sequencing technology(1) |
title_sort | development of microsatellite markers for sargentodoxa cuneata (lardizabalaceae) using next-generation sequencing technology(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873275/ https://www.ncbi.nlm.nih.gov/pubmed/27213128 http://dx.doi.org/10.3732/apps.1600003 |
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