Cargando…

Giraffe genome sequence reveals clues to its unique morphology and physiology

The origins of giraffe's imposing stature and associated cardiovascular adaptations are unknown. Okapi, which lacks these unique features, is giraffe's closest relative and provides a useful comparison, to identify genetic variation underlying giraffe's long neck and cardiovascular sy...

Descripción completa

Detalles Bibliográficos
Autores principales: Agaba, Morris, Ishengoma, Edson, Miller, Webb C., McGrath, Barbara C., Hudson, Chelsea N., Bedoya Reina, Oscar C., Ratan, Aakrosh, Burhans, Rico, Chikhi, Rayan, Medvedev, Paul, Praul, Craig A., Wu-Cavener, Lan, Wood, Brendan, Robertson, Heather, Penfold, Linda, Cavener, Douglas R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873664/
https://www.ncbi.nlm.nih.gov/pubmed/27187213
http://dx.doi.org/10.1038/ncomms11519
_version_ 1782432922981105664
author Agaba, Morris
Ishengoma, Edson
Miller, Webb C.
McGrath, Barbara C.
Hudson, Chelsea N.
Bedoya Reina, Oscar C.
Ratan, Aakrosh
Burhans, Rico
Chikhi, Rayan
Medvedev, Paul
Praul, Craig A.
Wu-Cavener, Lan
Wood, Brendan
Robertson, Heather
Penfold, Linda
Cavener, Douglas R.
author_facet Agaba, Morris
Ishengoma, Edson
Miller, Webb C.
McGrath, Barbara C.
Hudson, Chelsea N.
Bedoya Reina, Oscar C.
Ratan, Aakrosh
Burhans, Rico
Chikhi, Rayan
Medvedev, Paul
Praul, Craig A.
Wu-Cavener, Lan
Wood, Brendan
Robertson, Heather
Penfold, Linda
Cavener, Douglas R.
author_sort Agaba, Morris
collection PubMed
description The origins of giraffe's imposing stature and associated cardiovascular adaptations are unknown. Okapi, which lacks these unique features, is giraffe's closest relative and provides a useful comparison, to identify genetic variation underlying giraffe's long neck and cardiovascular system. The genomes of giraffe and okapi were sequenced, and through comparative analyses genes and pathways were identified that exhibit unique genetic changes and likely contribute to giraffe's unique features. Some of these genes are in the HOX, NOTCH and FGF signalling pathways, which regulate both skeletal and cardiovascular development, suggesting that giraffe's stature and cardiovascular adaptations evolved in parallel through changes in a small number of genes. Mitochondrial metabolism and volatile fatty acids transport genes are also evolutionarily diverged in giraffe and may be related to its unusual diet that includes toxic plants. Unexpectedly, substantial evolutionary changes have occurred in giraffe and okapi in double-strand break repair and centrosome functions.
format Online
Article
Text
id pubmed-4873664
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-48736642016-06-02 Giraffe genome sequence reveals clues to its unique morphology and physiology Agaba, Morris Ishengoma, Edson Miller, Webb C. McGrath, Barbara C. Hudson, Chelsea N. Bedoya Reina, Oscar C. Ratan, Aakrosh Burhans, Rico Chikhi, Rayan Medvedev, Paul Praul, Craig A. Wu-Cavener, Lan Wood, Brendan Robertson, Heather Penfold, Linda Cavener, Douglas R. Nat Commun Article The origins of giraffe's imposing stature and associated cardiovascular adaptations are unknown. Okapi, which lacks these unique features, is giraffe's closest relative and provides a useful comparison, to identify genetic variation underlying giraffe's long neck and cardiovascular system. The genomes of giraffe and okapi were sequenced, and through comparative analyses genes and pathways were identified that exhibit unique genetic changes and likely contribute to giraffe's unique features. Some of these genes are in the HOX, NOTCH and FGF signalling pathways, which regulate both skeletal and cardiovascular development, suggesting that giraffe's stature and cardiovascular adaptations evolved in parallel through changes in a small number of genes. Mitochondrial metabolism and volatile fatty acids transport genes are also evolutionarily diverged in giraffe and may be related to its unusual diet that includes toxic plants. Unexpectedly, substantial evolutionary changes have occurred in giraffe and okapi in double-strand break repair and centrosome functions. Nature Publishing Group 2016-05-17 /pmc/articles/PMC4873664/ /pubmed/27187213 http://dx.doi.org/10.1038/ncomms11519 Text en Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by-nc-sa/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/
spellingShingle Article
Agaba, Morris
Ishengoma, Edson
Miller, Webb C.
McGrath, Barbara C.
Hudson, Chelsea N.
Bedoya Reina, Oscar C.
Ratan, Aakrosh
Burhans, Rico
Chikhi, Rayan
Medvedev, Paul
Praul, Craig A.
Wu-Cavener, Lan
Wood, Brendan
Robertson, Heather
Penfold, Linda
Cavener, Douglas R.
Giraffe genome sequence reveals clues to its unique morphology and physiology
title Giraffe genome sequence reveals clues to its unique morphology and physiology
title_full Giraffe genome sequence reveals clues to its unique morphology and physiology
title_fullStr Giraffe genome sequence reveals clues to its unique morphology and physiology
title_full_unstemmed Giraffe genome sequence reveals clues to its unique morphology and physiology
title_short Giraffe genome sequence reveals clues to its unique morphology and physiology
title_sort giraffe genome sequence reveals clues to its unique morphology and physiology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873664/
https://www.ncbi.nlm.nih.gov/pubmed/27187213
http://dx.doi.org/10.1038/ncomms11519
work_keys_str_mv AT agabamorris giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT ishengomaedson giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT millerwebbc giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT mcgrathbarbarac giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT hudsonchelsean giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT bedoyareinaoscarc giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT ratanaakrosh giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT burhansrico giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT chikhirayan giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT medvedevpaul giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT praulcraiga giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT wucavenerlan giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT woodbrendan giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT robertsonheather giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT penfoldlinda giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology
AT cavenerdouglasr giraffegenomesequencerevealscluestoitsuniquemorphologyandphysiology