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Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding

Ribosomal RNA internal transcribed spacer-1 (ITS1) metabarcoding was used to investigate the distribution patterns of fungal communities and the factors influencing these patterns in subtropical Chinese seas, including the southern and northern Yellow Sea and the Bohai Sea. These seas were found to...

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Autores principales: Li, Wei, Wang, Meng Meng, Wang, Xi Guang, Cheng, Xiao Li, Guo, Jia Jia, Bian, Xiao Meng, Cai, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873734/
https://www.ncbi.nlm.nih.gov/pubmed/27198490
http://dx.doi.org/10.1038/srep26528
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author Li, Wei
Wang, Meng Meng
Wang, Xi Guang
Cheng, Xiao Li
Guo, Jia Jia
Bian, Xiao Meng
Cai, Lei
author_facet Li, Wei
Wang, Meng Meng
Wang, Xi Guang
Cheng, Xiao Li
Guo, Jia Jia
Bian, Xiao Meng
Cai, Lei
author_sort Li, Wei
collection PubMed
description Ribosomal RNA internal transcribed spacer-1 (ITS1) metabarcoding was used to investigate the distribution patterns of fungal communities and the factors influencing these patterns in subtropical Chinese seas, including the southern and northern Yellow Sea and the Bohai Sea. These seas were found to harbor high levels of fungal diversity, with 816 operational taxonomic units (OTUs) that span 130 known genera, 36 orders, 14 classes and 5 phyla. Ascomycota was the most abundant phylum, containing 72.18% and 79.61% of all OTUs and sequences, respectively, followed by Basidiomycota (19.98%, 18.64%), Zygomycota (1.10%, 0.11%), Chytridiomycota (0.25%, 0.04%) and Rozellomycota (0.12%, 0.006%). The compositions of fungal communities across these three sea regions were found to be vary, which may be attributed to sediment source, geographical distance, latitude and some environmental factors such as the temperature and salinity of bottom water, water depth, total nitrogen, and the ratio of total organic carbon to nitrogen. Among these environmental factors, the temperature of bottom water is the most important driver that governs the distribution patterns of fungal communities across the sampled seas. Our data also suggest that the cold-water mass of the Yellow Sea likely balances competitive relationships between fungal taxa rather than increasing species richness levels.
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spelling pubmed-48737342016-06-02 Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding Li, Wei Wang, Meng Meng Wang, Xi Guang Cheng, Xiao Li Guo, Jia Jia Bian, Xiao Meng Cai, Lei Sci Rep Article Ribosomal RNA internal transcribed spacer-1 (ITS1) metabarcoding was used to investigate the distribution patterns of fungal communities and the factors influencing these patterns in subtropical Chinese seas, including the southern and northern Yellow Sea and the Bohai Sea. These seas were found to harbor high levels of fungal diversity, with 816 operational taxonomic units (OTUs) that span 130 known genera, 36 orders, 14 classes and 5 phyla. Ascomycota was the most abundant phylum, containing 72.18% and 79.61% of all OTUs and sequences, respectively, followed by Basidiomycota (19.98%, 18.64%), Zygomycota (1.10%, 0.11%), Chytridiomycota (0.25%, 0.04%) and Rozellomycota (0.12%, 0.006%). The compositions of fungal communities across these three sea regions were found to be vary, which may be attributed to sediment source, geographical distance, latitude and some environmental factors such as the temperature and salinity of bottom water, water depth, total nitrogen, and the ratio of total organic carbon to nitrogen. Among these environmental factors, the temperature of bottom water is the most important driver that governs the distribution patterns of fungal communities across the sampled seas. Our data also suggest that the cold-water mass of the Yellow Sea likely balances competitive relationships between fungal taxa rather than increasing species richness levels. Nature Publishing Group 2016-05-20 /pmc/articles/PMC4873734/ /pubmed/27198490 http://dx.doi.org/10.1038/srep26528 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Li, Wei
Wang, Meng Meng
Wang, Xi Guang
Cheng, Xiao Li
Guo, Jia Jia
Bian, Xiao Meng
Cai, Lei
Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
title Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
title_full Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
title_fullStr Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
title_full_unstemmed Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
title_short Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
title_sort fungal communities in sediments of subtropical chinese seas as estimated by dna metabarcoding
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873734/
https://www.ncbi.nlm.nih.gov/pubmed/27198490
http://dx.doi.org/10.1038/srep26528
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