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Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
Ribosomal RNA internal transcribed spacer-1 (ITS1) metabarcoding was used to investigate the distribution patterns of fungal communities and the factors influencing these patterns in subtropical Chinese seas, including the southern and northern Yellow Sea and the Bohai Sea. These seas were found to...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873734/ https://www.ncbi.nlm.nih.gov/pubmed/27198490 http://dx.doi.org/10.1038/srep26528 |
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author | Li, Wei Wang, Meng Meng Wang, Xi Guang Cheng, Xiao Li Guo, Jia Jia Bian, Xiao Meng Cai, Lei |
author_facet | Li, Wei Wang, Meng Meng Wang, Xi Guang Cheng, Xiao Li Guo, Jia Jia Bian, Xiao Meng Cai, Lei |
author_sort | Li, Wei |
collection | PubMed |
description | Ribosomal RNA internal transcribed spacer-1 (ITS1) metabarcoding was used to investigate the distribution patterns of fungal communities and the factors influencing these patterns in subtropical Chinese seas, including the southern and northern Yellow Sea and the Bohai Sea. These seas were found to harbor high levels of fungal diversity, with 816 operational taxonomic units (OTUs) that span 130 known genera, 36 orders, 14 classes and 5 phyla. Ascomycota was the most abundant phylum, containing 72.18% and 79.61% of all OTUs and sequences, respectively, followed by Basidiomycota (19.98%, 18.64%), Zygomycota (1.10%, 0.11%), Chytridiomycota (0.25%, 0.04%) and Rozellomycota (0.12%, 0.006%). The compositions of fungal communities across these three sea regions were found to be vary, which may be attributed to sediment source, geographical distance, latitude and some environmental factors such as the temperature and salinity of bottom water, water depth, total nitrogen, and the ratio of total organic carbon to nitrogen. Among these environmental factors, the temperature of bottom water is the most important driver that governs the distribution patterns of fungal communities across the sampled seas. Our data also suggest that the cold-water mass of the Yellow Sea likely balances competitive relationships between fungal taxa rather than increasing species richness levels. |
format | Online Article Text |
id | pubmed-4873734 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48737342016-06-02 Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding Li, Wei Wang, Meng Meng Wang, Xi Guang Cheng, Xiao Li Guo, Jia Jia Bian, Xiao Meng Cai, Lei Sci Rep Article Ribosomal RNA internal transcribed spacer-1 (ITS1) metabarcoding was used to investigate the distribution patterns of fungal communities and the factors influencing these patterns in subtropical Chinese seas, including the southern and northern Yellow Sea and the Bohai Sea. These seas were found to harbor high levels of fungal diversity, with 816 operational taxonomic units (OTUs) that span 130 known genera, 36 orders, 14 classes and 5 phyla. Ascomycota was the most abundant phylum, containing 72.18% and 79.61% of all OTUs and sequences, respectively, followed by Basidiomycota (19.98%, 18.64%), Zygomycota (1.10%, 0.11%), Chytridiomycota (0.25%, 0.04%) and Rozellomycota (0.12%, 0.006%). The compositions of fungal communities across these three sea regions were found to be vary, which may be attributed to sediment source, geographical distance, latitude and some environmental factors such as the temperature and salinity of bottom water, water depth, total nitrogen, and the ratio of total organic carbon to nitrogen. Among these environmental factors, the temperature of bottom water is the most important driver that governs the distribution patterns of fungal communities across the sampled seas. Our data also suggest that the cold-water mass of the Yellow Sea likely balances competitive relationships between fungal taxa rather than increasing species richness levels. Nature Publishing Group 2016-05-20 /pmc/articles/PMC4873734/ /pubmed/27198490 http://dx.doi.org/10.1038/srep26528 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Li, Wei Wang, Meng Meng Wang, Xi Guang Cheng, Xiao Li Guo, Jia Jia Bian, Xiao Meng Cai, Lei Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding |
title | Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding |
title_full | Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding |
title_fullStr | Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding |
title_full_unstemmed | Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding |
title_short | Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding |
title_sort | fungal communities in sediments of subtropical chinese seas as estimated by dna metabarcoding |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873734/ https://www.ncbi.nlm.nih.gov/pubmed/27198490 http://dx.doi.org/10.1038/srep26528 |
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