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Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues
Development is a process that needs to be tightly coordinated in both space and time. Cell tracking and lineage tracing have become important experimental techniques in developmental biology and allow us to map the fate of cells and their progeny. A generic feature of developing and homeostatic tiss...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4874433/ https://www.ncbi.nlm.nih.gov/pubmed/27053656 http://dx.doi.org/10.1098/rsif.2016.0112 |
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author | Smadbeck, Patrick Stumpf, Michael P. H. |
author_facet | Smadbeck, Patrick Stumpf, Michael P. H. |
author_sort | Smadbeck, Patrick |
collection | PubMed |
description | Development is a process that needs to be tightly coordinated in both space and time. Cell tracking and lineage tracing have become important experimental techniques in developmental biology and allow us to map the fate of cells and their progeny. A generic feature of developing and homeostatic tissues that these analyses have revealed is that relatively few cells give rise to the bulk of the cells in a tissue; the lineages of most cells come to an end quickly. Computational and theoretical biologists/physicists have, in response, developed a range of modelling approaches, most notably agent-based modelling. These models seem to capture features observed in experiments, but can also become computationally expensive. Here, we develop complementary genealogical models of tissue development that trace the ancestry of cells in a tissue back to their most recent common ancestors. We show that with both bounded and unbounded growth simple, but universal scaling relationships allow us to connect coalescent theory with the fractal growth models extensively used in developmental biology. Using our genealogical perspective, it is possible to study bulk statistical properties of the processes that give rise to tissues of cells, without the need for large-scale simulations. |
format | Online Article Text |
id | pubmed-4874433 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-48744332016-05-25 Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues Smadbeck, Patrick Stumpf, Michael P. H. J R Soc Interface Life Sciences–Mathematics interface Development is a process that needs to be tightly coordinated in both space and time. Cell tracking and lineage tracing have become important experimental techniques in developmental biology and allow us to map the fate of cells and their progeny. A generic feature of developing and homeostatic tissues that these analyses have revealed is that relatively few cells give rise to the bulk of the cells in a tissue; the lineages of most cells come to an end quickly. Computational and theoretical biologists/physicists have, in response, developed a range of modelling approaches, most notably agent-based modelling. These models seem to capture features observed in experiments, but can also become computationally expensive. Here, we develop complementary genealogical models of tissue development that trace the ancestry of cells in a tissue back to their most recent common ancestors. We show that with both bounded and unbounded growth simple, but universal scaling relationships allow us to connect coalescent theory with the fractal growth models extensively used in developmental biology. Using our genealogical perspective, it is possible to study bulk statistical properties of the processes that give rise to tissues of cells, without the need for large-scale simulations. The Royal Society 2016-04 /pmc/articles/PMC4874433/ /pubmed/27053656 http://dx.doi.org/10.1098/rsif.2016.0112 Text en © 2016 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Mathematics interface Smadbeck, Patrick Stumpf, Michael P. H. Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues |
title | Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues |
title_full | Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues |
title_fullStr | Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues |
title_full_unstemmed | Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues |
title_short | Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues |
title_sort | coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues |
topic | Life Sciences–Mathematics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4874433/ https://www.ncbi.nlm.nih.gov/pubmed/27053656 http://dx.doi.org/10.1098/rsif.2016.0112 |
work_keys_str_mv | AT smadbeckpatrick coalescentmodelsfordevelopmentalbiologyandthespatiotemporaldynamicsofgrowingtissues AT stumpfmichaelph coalescentmodelsfordevelopmentalbiologyandthespatiotemporaldynamicsofgrowingtissues |