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Leaf epidermis images for robust identification of plants
This paper proposes a methodology for plant analysis and identification based on extracting texture features from microscopic images of leaf epidermis. All the experiments were carried out using 32 plant species with 309 epidermal samples captured by an optical microscope coupled to a digital camera...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4877573/ https://www.ncbi.nlm.nih.gov/pubmed/27217018 http://dx.doi.org/10.1038/srep25994 |
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author | da Silva, Núbia Rosa Oliveira, Marcos William da Silva Filho, Humberto Antunes de Almeida Pinheiro, Luiz Felipe Souza Rossatto, Davi Rodrigo Kolb, Rosana Marta Bruno, Odemir Martinez |
author_facet | da Silva, Núbia Rosa Oliveira, Marcos William da Silva Filho, Humberto Antunes de Almeida Pinheiro, Luiz Felipe Souza Rossatto, Davi Rodrigo Kolb, Rosana Marta Bruno, Odemir Martinez |
author_sort | da Silva, Núbia Rosa |
collection | PubMed |
description | This paper proposes a methodology for plant analysis and identification based on extracting texture features from microscopic images of leaf epidermis. All the experiments were carried out using 32 plant species with 309 epidermal samples captured by an optical microscope coupled to a digital camera. The results of the computational methods using texture features were compared to the conventional approach, where quantitative measurements of stomatal traits (density, length and width) were manually obtained. Epidermis image classification using texture has achieved a success rate of over 96%, while success rate was around 60% for quantitative measurements taken manually. Furthermore, we verified the robustness of our method accounting for natural phenotypic plasticity of stomata, analysing samples from the same species grown in different environments. Texture methods were robust even when considering phenotypic plasticity of stomatal traits with a decrease of 20% in the success rate, as quantitative measurements proved to be fully sensitive with a decrease of 77%. Results from the comparison between the computational approach and the conventional quantitative measurements lead us to discover how computational systems are advantageous and promising in terms of solving problems related to Botany, such as species identification. |
format | Online Article Text |
id | pubmed-4877573 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48775732016-06-08 Leaf epidermis images for robust identification of plants da Silva, Núbia Rosa Oliveira, Marcos William da Silva Filho, Humberto Antunes de Almeida Pinheiro, Luiz Felipe Souza Rossatto, Davi Rodrigo Kolb, Rosana Marta Bruno, Odemir Martinez Sci Rep Article This paper proposes a methodology for plant analysis and identification based on extracting texture features from microscopic images of leaf epidermis. All the experiments were carried out using 32 plant species with 309 epidermal samples captured by an optical microscope coupled to a digital camera. The results of the computational methods using texture features were compared to the conventional approach, where quantitative measurements of stomatal traits (density, length and width) were manually obtained. Epidermis image classification using texture has achieved a success rate of over 96%, while success rate was around 60% for quantitative measurements taken manually. Furthermore, we verified the robustness of our method accounting for natural phenotypic plasticity of stomata, analysing samples from the same species grown in different environments. Texture methods were robust even when considering phenotypic plasticity of stomatal traits with a decrease of 20% in the success rate, as quantitative measurements proved to be fully sensitive with a decrease of 77%. Results from the comparison between the computational approach and the conventional quantitative measurements lead us to discover how computational systems are advantageous and promising in terms of solving problems related to Botany, such as species identification. Nature Publishing Group 2016-05-24 /pmc/articles/PMC4877573/ /pubmed/27217018 http://dx.doi.org/10.1038/srep25994 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article da Silva, Núbia Rosa Oliveira, Marcos William da Silva Filho, Humberto Antunes de Almeida Pinheiro, Luiz Felipe Souza Rossatto, Davi Rodrigo Kolb, Rosana Marta Bruno, Odemir Martinez Leaf epidermis images for robust identification of plants |
title | Leaf epidermis images for robust identification of plants |
title_full | Leaf epidermis images for robust identification of plants |
title_fullStr | Leaf epidermis images for robust identification of plants |
title_full_unstemmed | Leaf epidermis images for robust identification of plants |
title_short | Leaf epidermis images for robust identification of plants |
title_sort | leaf epidermis images for robust identification of plants |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4877573/ https://www.ncbi.nlm.nih.gov/pubmed/27217018 http://dx.doi.org/10.1038/srep25994 |
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