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Leaf epidermis images for robust identification of plants

This paper proposes a methodology for plant analysis and identification based on extracting texture features from microscopic images of leaf epidermis. All the experiments were carried out using 32 plant species with 309 epidermal samples captured by an optical microscope coupled to a digital camera...

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Autores principales: da Silva, Núbia Rosa, Oliveira, Marcos William da Silva, Filho, Humberto Antunes de Almeida, Pinheiro, Luiz Felipe Souza, Rossatto, Davi Rodrigo, Kolb, Rosana Marta, Bruno, Odemir Martinez
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4877573/
https://www.ncbi.nlm.nih.gov/pubmed/27217018
http://dx.doi.org/10.1038/srep25994
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author da Silva, Núbia Rosa
Oliveira, Marcos William da Silva
Filho, Humberto Antunes de Almeida
Pinheiro, Luiz Felipe Souza
Rossatto, Davi Rodrigo
Kolb, Rosana Marta
Bruno, Odemir Martinez
author_facet da Silva, Núbia Rosa
Oliveira, Marcos William da Silva
Filho, Humberto Antunes de Almeida
Pinheiro, Luiz Felipe Souza
Rossatto, Davi Rodrigo
Kolb, Rosana Marta
Bruno, Odemir Martinez
author_sort da Silva, Núbia Rosa
collection PubMed
description This paper proposes a methodology for plant analysis and identification based on extracting texture features from microscopic images of leaf epidermis. All the experiments were carried out using 32 plant species with 309 epidermal samples captured by an optical microscope coupled to a digital camera. The results of the computational methods using texture features were compared to the conventional approach, where quantitative measurements of stomatal traits (density, length and width) were manually obtained. Epidermis image classification using texture has achieved a success rate of over 96%, while success rate was around 60% for quantitative measurements taken manually. Furthermore, we verified the robustness of our method accounting for natural phenotypic plasticity of stomata, analysing samples from the same species grown in different environments. Texture methods were robust even when considering phenotypic plasticity of stomatal traits with a decrease of 20% in the success rate, as quantitative measurements proved to be fully sensitive with a decrease of 77%. Results from the comparison between the computational approach and the conventional quantitative measurements lead us to discover how computational systems are advantageous and promising in terms of solving problems related to Botany, such as species identification.
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spelling pubmed-48775732016-06-08 Leaf epidermis images for robust identification of plants da Silva, Núbia Rosa Oliveira, Marcos William da Silva Filho, Humberto Antunes de Almeida Pinheiro, Luiz Felipe Souza Rossatto, Davi Rodrigo Kolb, Rosana Marta Bruno, Odemir Martinez Sci Rep Article This paper proposes a methodology for plant analysis and identification based on extracting texture features from microscopic images of leaf epidermis. All the experiments were carried out using 32 plant species with 309 epidermal samples captured by an optical microscope coupled to a digital camera. The results of the computational methods using texture features were compared to the conventional approach, where quantitative measurements of stomatal traits (density, length and width) were manually obtained. Epidermis image classification using texture has achieved a success rate of over 96%, while success rate was around 60% for quantitative measurements taken manually. Furthermore, we verified the robustness of our method accounting for natural phenotypic plasticity of stomata, analysing samples from the same species grown in different environments. Texture methods were robust even when considering phenotypic plasticity of stomatal traits with a decrease of 20% in the success rate, as quantitative measurements proved to be fully sensitive with a decrease of 77%. Results from the comparison between the computational approach and the conventional quantitative measurements lead us to discover how computational systems are advantageous and promising in terms of solving problems related to Botany, such as species identification. Nature Publishing Group 2016-05-24 /pmc/articles/PMC4877573/ /pubmed/27217018 http://dx.doi.org/10.1038/srep25994 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
da Silva, Núbia Rosa
Oliveira, Marcos William da Silva
Filho, Humberto Antunes de Almeida
Pinheiro, Luiz Felipe Souza
Rossatto, Davi Rodrigo
Kolb, Rosana Marta
Bruno, Odemir Martinez
Leaf epidermis images for robust identification of plants
title Leaf epidermis images for robust identification of plants
title_full Leaf epidermis images for robust identification of plants
title_fullStr Leaf epidermis images for robust identification of plants
title_full_unstemmed Leaf epidermis images for robust identification of plants
title_short Leaf epidermis images for robust identification of plants
title_sort leaf epidermis images for robust identification of plants
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4877573/
https://www.ncbi.nlm.nih.gov/pubmed/27217018
http://dx.doi.org/10.1038/srep25994
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