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De novo transcriptome assembly of two Vigna angularis varieties collected from Korea

The adzuki bean (Vigna angularis), a member of the family Fabaceae, is widely grown in Asia, from East Asia to the Himalayas. The adzuki bean is known as an ingredient that adds sweetness to diverse desserts made in Eastern Asian countries. Libraries prepared from two V. angularis varieties referred...

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Autores principales: Jo, Yeonhwa, Lian, Sen, Cho, Jin Kyong, Choi, Hoseong, Kim, Sang-Min, Kim, Sun-Lim, Lee, Bong Choon, Cho, Won Kyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878840/
https://www.ncbi.nlm.nih.gov/pubmed/27257605
http://dx.doi.org/10.1016/j.gdata.2016.05.004
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author Jo, Yeonhwa
Lian, Sen
Cho, Jin Kyong
Choi, Hoseong
Kim, Sang-Min
Kim, Sun-Lim
Lee, Bong Choon
Cho, Won Kyong
author_facet Jo, Yeonhwa
Lian, Sen
Cho, Jin Kyong
Choi, Hoseong
Kim, Sang-Min
Kim, Sun-Lim
Lee, Bong Choon
Cho, Won Kyong
author_sort Jo, Yeonhwa
collection PubMed
description The adzuki bean (Vigna angularis), a member of the family Fabaceae, is widely grown in Asia, from East Asia to the Himalayas. The adzuki bean is known as an ingredient that adds sweetness to diverse desserts made in Eastern Asian countries. Libraries prepared from two V. angularis varieties referred to as Taejin Black and Taejin Red were paired-end sequenced using the Illumina HiSeq 2000 system. The raw data in this study can be available in NCBI SRA database with accession numbers of SRR3406660 and SRR3406553. After de novo transcriptome assembly using Trinity, we obtained 324,219 and 280,056 transcripts from Taejin Black and Taejin Red, respectively. We predicted a total of 238,321 proteins and 179,519 proteins for Taejin Black and Taejin Red, respectively, by the TransDecoder program. We carried out BLASTP on the predicted proteins against the Swiss-Prot protein sequence database to predict the putative functions of identified proteins. Taken together, we provide transcriptomes of two adzuki bean varieties by RNA-Seq, which might be usefully applied to generate molecular markers.
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spelling pubmed-48788402016-06-02 De novo transcriptome assembly of two Vigna angularis varieties collected from Korea Jo, Yeonhwa Lian, Sen Cho, Jin Kyong Choi, Hoseong Kim, Sang-Min Kim, Sun-Lim Lee, Bong Choon Cho, Won Kyong Genom Data Data in Brief Article The adzuki bean (Vigna angularis), a member of the family Fabaceae, is widely grown in Asia, from East Asia to the Himalayas. The adzuki bean is known as an ingredient that adds sweetness to diverse desserts made in Eastern Asian countries. Libraries prepared from two V. angularis varieties referred to as Taejin Black and Taejin Red were paired-end sequenced using the Illumina HiSeq 2000 system. The raw data in this study can be available in NCBI SRA database with accession numbers of SRR3406660 and SRR3406553. After de novo transcriptome assembly using Trinity, we obtained 324,219 and 280,056 transcripts from Taejin Black and Taejin Red, respectively. We predicted a total of 238,321 proteins and 179,519 proteins for Taejin Black and Taejin Red, respectively, by the TransDecoder program. We carried out BLASTP on the predicted proteins against the Swiss-Prot protein sequence database to predict the putative functions of identified proteins. Taken together, we provide transcriptomes of two adzuki bean varieties by RNA-Seq, which might be usefully applied to generate molecular markers. Elsevier 2016-05-05 /pmc/articles/PMC4878840/ /pubmed/27257605 http://dx.doi.org/10.1016/j.gdata.2016.05.004 Text en © 2016 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief Article
Jo, Yeonhwa
Lian, Sen
Cho, Jin Kyong
Choi, Hoseong
Kim, Sang-Min
Kim, Sun-Lim
Lee, Bong Choon
Cho, Won Kyong
De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
title De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
title_full De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
title_fullStr De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
title_full_unstemmed De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
title_short De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
title_sort de novo transcriptome assembly of two vigna angularis varieties collected from korea
topic Data in Brief Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878840/
https://www.ncbi.nlm.nih.gov/pubmed/27257605
http://dx.doi.org/10.1016/j.gdata.2016.05.004
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