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De novo transcriptome assembly of two Vigna angularis varieties collected from Korea
The adzuki bean (Vigna angularis), a member of the family Fabaceae, is widely grown in Asia, from East Asia to the Himalayas. The adzuki bean is known as an ingredient that adds sweetness to diverse desserts made in Eastern Asian countries. Libraries prepared from two V. angularis varieties referred...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878840/ https://www.ncbi.nlm.nih.gov/pubmed/27257605 http://dx.doi.org/10.1016/j.gdata.2016.05.004 |
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author | Jo, Yeonhwa Lian, Sen Cho, Jin Kyong Choi, Hoseong Kim, Sang-Min Kim, Sun-Lim Lee, Bong Choon Cho, Won Kyong |
author_facet | Jo, Yeonhwa Lian, Sen Cho, Jin Kyong Choi, Hoseong Kim, Sang-Min Kim, Sun-Lim Lee, Bong Choon Cho, Won Kyong |
author_sort | Jo, Yeonhwa |
collection | PubMed |
description | The adzuki bean (Vigna angularis), a member of the family Fabaceae, is widely grown in Asia, from East Asia to the Himalayas. The adzuki bean is known as an ingredient that adds sweetness to diverse desserts made in Eastern Asian countries. Libraries prepared from two V. angularis varieties referred to as Taejin Black and Taejin Red were paired-end sequenced using the Illumina HiSeq 2000 system. The raw data in this study can be available in NCBI SRA database with accession numbers of SRR3406660 and SRR3406553. After de novo transcriptome assembly using Trinity, we obtained 324,219 and 280,056 transcripts from Taejin Black and Taejin Red, respectively. We predicted a total of 238,321 proteins and 179,519 proteins for Taejin Black and Taejin Red, respectively, by the TransDecoder program. We carried out BLASTP on the predicted proteins against the Swiss-Prot protein sequence database to predict the putative functions of identified proteins. Taken together, we provide transcriptomes of two adzuki bean varieties by RNA-Seq, which might be usefully applied to generate molecular markers. |
format | Online Article Text |
id | pubmed-4878840 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48788402016-06-02 De novo transcriptome assembly of two Vigna angularis varieties collected from Korea Jo, Yeonhwa Lian, Sen Cho, Jin Kyong Choi, Hoseong Kim, Sang-Min Kim, Sun-Lim Lee, Bong Choon Cho, Won Kyong Genom Data Data in Brief Article The adzuki bean (Vigna angularis), a member of the family Fabaceae, is widely grown in Asia, from East Asia to the Himalayas. The adzuki bean is known as an ingredient that adds sweetness to diverse desserts made in Eastern Asian countries. Libraries prepared from two V. angularis varieties referred to as Taejin Black and Taejin Red were paired-end sequenced using the Illumina HiSeq 2000 system. The raw data in this study can be available in NCBI SRA database with accession numbers of SRR3406660 and SRR3406553. After de novo transcriptome assembly using Trinity, we obtained 324,219 and 280,056 transcripts from Taejin Black and Taejin Red, respectively. We predicted a total of 238,321 proteins and 179,519 proteins for Taejin Black and Taejin Red, respectively, by the TransDecoder program. We carried out BLASTP on the predicted proteins against the Swiss-Prot protein sequence database to predict the putative functions of identified proteins. Taken together, we provide transcriptomes of two adzuki bean varieties by RNA-Seq, which might be usefully applied to generate molecular markers. Elsevier 2016-05-05 /pmc/articles/PMC4878840/ /pubmed/27257605 http://dx.doi.org/10.1016/j.gdata.2016.05.004 Text en © 2016 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Article Jo, Yeonhwa Lian, Sen Cho, Jin Kyong Choi, Hoseong Kim, Sang-Min Kim, Sun-Lim Lee, Bong Choon Cho, Won Kyong De novo transcriptome assembly of two Vigna angularis varieties collected from Korea |
title | De novo transcriptome assembly of two Vigna angularis varieties collected from Korea |
title_full | De novo transcriptome assembly of two Vigna angularis varieties collected from Korea |
title_fullStr | De novo transcriptome assembly of two Vigna angularis varieties collected from Korea |
title_full_unstemmed | De novo transcriptome assembly of two Vigna angularis varieties collected from Korea |
title_short | De novo transcriptome assembly of two Vigna angularis varieties collected from Korea |
title_sort | de novo transcriptome assembly of two vigna angularis varieties collected from korea |
topic | Data in Brief Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878840/ https://www.ncbi.nlm.nih.gov/pubmed/27257605 http://dx.doi.org/10.1016/j.gdata.2016.05.004 |
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