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Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance
As the most prevalent bacterial cause of human gastroenteritis, food-borne Campylobacter infections pose a serious threat to public health. Whole Genome Sequencing (WGS) is a tool providing quick and inexpensive approaches for analysis of food-borne pathogen epidemics. Here we report the WGS and ann...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878843/ https://www.ncbi.nlm.nih.gov/pubmed/27257607 http://dx.doi.org/10.1016/j.gdata.2016.05.003 |
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author | Liu, Kun C. Jinneman, Karen C. Neal-McKinney, Jason Wu, Wen-Hsin Rice, Daniel H. |
author_facet | Liu, Kun C. Jinneman, Karen C. Neal-McKinney, Jason Wu, Wen-Hsin Rice, Daniel H. |
author_sort | Liu, Kun C. |
collection | PubMed |
description | As the most prevalent bacterial cause of human gastroenteritis, food-borne Campylobacter infections pose a serious threat to public health. Whole Genome Sequencing (WGS) is a tool providing quick and inexpensive approaches for analysis of food-borne pathogen epidemics. Here we report the WGS and annotation of a Campylobacter coli strain, FNW20G12, which was isolated from milk in the United States in 1997 and carries multidrug resistance. The draft genome of FNW20G12 (DDBJ/ENA/GenBank accession number LWIH00000000) contains 1, 855,435 bp (GC content 31.4%) with 1902 annotated coding regions, 48 RNAs and resistance to aminoglycoside, beta-lactams, tetracycline, as well as fluoroquinolones. There are very few genome reports of C. coli from dairy products with multidrug resistance. Here the draft genome of FNW20G12, a C. coli strain isolated from raw milk, is presented to aid in the epidemiology study of C. coli antimicrobial resistance and role in foodborne outbreak. |
format | Online Article Text |
id | pubmed-4878843 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48788432016-06-02 Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance Liu, Kun C. Jinneman, Karen C. Neal-McKinney, Jason Wu, Wen-Hsin Rice, Daniel H. Genom Data Data in Brief As the most prevalent bacterial cause of human gastroenteritis, food-borne Campylobacter infections pose a serious threat to public health. Whole Genome Sequencing (WGS) is a tool providing quick and inexpensive approaches for analysis of food-borne pathogen epidemics. Here we report the WGS and annotation of a Campylobacter coli strain, FNW20G12, which was isolated from milk in the United States in 1997 and carries multidrug resistance. The draft genome of FNW20G12 (DDBJ/ENA/GenBank accession number LWIH00000000) contains 1, 855,435 bp (GC content 31.4%) with 1902 annotated coding regions, 48 RNAs and resistance to aminoglycoside, beta-lactams, tetracycline, as well as fluoroquinolones. There are very few genome reports of C. coli from dairy products with multidrug resistance. Here the draft genome of FNW20G12, a C. coli strain isolated from raw milk, is presented to aid in the epidemiology study of C. coli antimicrobial resistance and role in foodborne outbreak. Elsevier 2016-05-05 /pmc/articles/PMC4878843/ /pubmed/27257607 http://dx.doi.org/10.1016/j.gdata.2016.05.003 Text en http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data in Brief Liu, Kun C. Jinneman, Karen C. Neal-McKinney, Jason Wu, Wen-Hsin Rice, Daniel H. Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance |
title | Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance |
title_full | Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance |
title_fullStr | Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance |
title_full_unstemmed | Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance |
title_short | Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance |
title_sort | genome sequencing and annotation of a campylobacter coli strain isolated from milk with multidrug resistance |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878843/ https://www.ncbi.nlm.nih.gov/pubmed/27257607 http://dx.doi.org/10.1016/j.gdata.2016.05.003 |
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