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Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance

As the most prevalent bacterial cause of human gastroenteritis, food-borne Campylobacter infections pose a serious threat to public health. Whole Genome Sequencing (WGS) is a tool providing quick and inexpensive approaches for analysis of food-borne pathogen epidemics. Here we report the WGS and ann...

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Autores principales: Liu, Kun C., Jinneman, Karen C., Neal-McKinney, Jason, Wu, Wen-Hsin, Rice, Daniel H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878843/
https://www.ncbi.nlm.nih.gov/pubmed/27257607
http://dx.doi.org/10.1016/j.gdata.2016.05.003
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author Liu, Kun C.
Jinneman, Karen C.
Neal-McKinney, Jason
Wu, Wen-Hsin
Rice, Daniel H.
author_facet Liu, Kun C.
Jinneman, Karen C.
Neal-McKinney, Jason
Wu, Wen-Hsin
Rice, Daniel H.
author_sort Liu, Kun C.
collection PubMed
description As the most prevalent bacterial cause of human gastroenteritis, food-borne Campylobacter infections pose a serious threat to public health. Whole Genome Sequencing (WGS) is a tool providing quick and inexpensive approaches for analysis of food-borne pathogen epidemics. Here we report the WGS and annotation of a Campylobacter coli strain, FNW20G12, which was isolated from milk in the United States in 1997 and carries multidrug resistance. The draft genome of FNW20G12 (DDBJ/ENA/GenBank accession number LWIH00000000) contains 1, 855,435 bp (GC content 31.4%) with 1902 annotated coding regions, 48 RNAs and resistance to aminoglycoside, beta-lactams, tetracycline, as well as fluoroquinolones. There are very few genome reports of C. coli from dairy products with multidrug resistance. Here the draft genome of FNW20G12, a C. coli strain isolated from raw milk, is presented to aid in the epidemiology study of C. coli antimicrobial resistance and role in foodborne outbreak.
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spelling pubmed-48788432016-06-02 Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance Liu, Kun C. Jinneman, Karen C. Neal-McKinney, Jason Wu, Wen-Hsin Rice, Daniel H. Genom Data Data in Brief As the most prevalent bacterial cause of human gastroenteritis, food-borne Campylobacter infections pose a serious threat to public health. Whole Genome Sequencing (WGS) is a tool providing quick and inexpensive approaches for analysis of food-borne pathogen epidemics. Here we report the WGS and annotation of a Campylobacter coli strain, FNW20G12, which was isolated from milk in the United States in 1997 and carries multidrug resistance. The draft genome of FNW20G12 (DDBJ/ENA/GenBank accession number LWIH00000000) contains 1, 855,435 bp (GC content 31.4%) with 1902 annotated coding regions, 48 RNAs and resistance to aminoglycoside, beta-lactams, tetracycline, as well as fluoroquinolones. There are very few genome reports of C. coli from dairy products with multidrug resistance. Here the draft genome of FNW20G12, a C. coli strain isolated from raw milk, is presented to aid in the epidemiology study of C. coli antimicrobial resistance and role in foodborne outbreak. Elsevier 2016-05-05 /pmc/articles/PMC4878843/ /pubmed/27257607 http://dx.doi.org/10.1016/j.gdata.2016.05.003 Text en http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data in Brief
Liu, Kun C.
Jinneman, Karen C.
Neal-McKinney, Jason
Wu, Wen-Hsin
Rice, Daniel H.
Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance
title Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance
title_full Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance
title_fullStr Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance
title_full_unstemmed Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance
title_short Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance
title_sort genome sequencing and annotation of a campylobacter coli strain isolated from milk with multidrug resistance
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878843/
https://www.ncbi.nlm.nih.gov/pubmed/27257607
http://dx.doi.org/10.1016/j.gdata.2016.05.003
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