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Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation

Purpose. To evaluate the feasibility of using Mechanical Turk as a massively parallel platform to perform manual segmentations of macular spectral domain optical coherence tomography (SD-OCT) images using a MapReduce framework. Methods. A macular SD-OCT volume of 61 slice images was map-distributed...

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Detalles Bibliográficos
Autores principales: Lee, Aaron Y., Lee, Cecilia S., Keane, Pearse A., Tufail, Adnan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4879255/
https://www.ncbi.nlm.nih.gov/pubmed/27293877
http://dx.doi.org/10.1155/2016/6571547
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author Lee, Aaron Y.
Lee, Cecilia S.
Keane, Pearse A.
Tufail, Adnan
author_facet Lee, Aaron Y.
Lee, Cecilia S.
Keane, Pearse A.
Tufail, Adnan
author_sort Lee, Aaron Y.
collection PubMed
description Purpose. To evaluate the feasibility of using Mechanical Turk as a massively parallel platform to perform manual segmentations of macular spectral domain optical coherence tomography (SD-OCT) images using a MapReduce framework. Methods. A macular SD-OCT volume of 61 slice images was map-distributed to Amazon Mechanical Turk. Each Human Intelligence Task was set to $0.01 and required the user to draw five lines to outline the sublayers of the retinal OCT image after being shown example images. Each image was submitted twice for segmentation, and interrater reliability was calculated. The interface was created using custom HTML5 and JavaScript code, and data analysis was performed using R. An automated pipeline was developed to handle the map and reduce steps of the framework. Results. More than 93,500 data points were collected using this framework for the 61 images submitted. Pearson's correlation of interrater reliability was 0.995 (p < 0.0001) and coefficient of determination was 0.991. The cost of segmenting the macular volume was $1.21. A total of 22 individual Mechanical Turk users provided segmentations, each completing an average of 5.5 HITs. Each HIT was completed in an average of 4.43 minutes. Conclusions. Amazon Mechanical Turk provides a cost-effective, scalable, high-availability infrastructure for manual segmentation of OCT images.
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spelling pubmed-48792552016-06-12 Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation Lee, Aaron Y. Lee, Cecilia S. Keane, Pearse A. Tufail, Adnan J Ophthalmol Research Article Purpose. To evaluate the feasibility of using Mechanical Turk as a massively parallel platform to perform manual segmentations of macular spectral domain optical coherence tomography (SD-OCT) images using a MapReduce framework. Methods. A macular SD-OCT volume of 61 slice images was map-distributed to Amazon Mechanical Turk. Each Human Intelligence Task was set to $0.01 and required the user to draw five lines to outline the sublayers of the retinal OCT image after being shown example images. Each image was submitted twice for segmentation, and interrater reliability was calculated. The interface was created using custom HTML5 and JavaScript code, and data analysis was performed using R. An automated pipeline was developed to handle the map and reduce steps of the framework. Results. More than 93,500 data points were collected using this framework for the 61 images submitted. Pearson's correlation of interrater reliability was 0.995 (p < 0.0001) and coefficient of determination was 0.991. The cost of segmenting the macular volume was $1.21. A total of 22 individual Mechanical Turk users provided segmentations, each completing an average of 5.5 HITs. Each HIT was completed in an average of 4.43 minutes. Conclusions. Amazon Mechanical Turk provides a cost-effective, scalable, high-availability infrastructure for manual segmentation of OCT images. Hindawi Publishing Corporation 2016 2016-05-11 /pmc/articles/PMC4879255/ /pubmed/27293877 http://dx.doi.org/10.1155/2016/6571547 Text en Copyright © 2016 Aaron Y. Lee et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Lee, Aaron Y.
Lee, Cecilia S.
Keane, Pearse A.
Tufail, Adnan
Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation
title Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation
title_full Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation
title_fullStr Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation
title_full_unstemmed Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation
title_short Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation
title_sort use of mechanical turk as a mapreduce framework for macular oct segmentation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4879255/
https://www.ncbi.nlm.nih.gov/pubmed/27293877
http://dx.doi.org/10.1155/2016/6571547
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