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PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF Leishmania spp.
In visceral leishmaniasis, the detection of the agent is of paramount importance to identify reservoirs of infection. Here, we evaluated the diagnostic attributes of PCRs based on primers directed to cytochrome-B (cytB), cytochrome-oxidase-subunit II (coxII), cytochrome-C (cytC), and the minicircle-...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Instituto de Medicina Tropical
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4879998/ https://www.ncbi.nlm.nih.gov/pubmed/27253743 http://dx.doi.org/10.1590/S1678-9946201658041 |
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author | LOPES, Estela Gallucci GERALDO, Carlos Alberto MARCILI, Arlei SILVA, Ricardo Duarte KEID, Lara Borges OLIVEIRA, Trícia Maria Ferreira da Silva SOARES, Rodrigo Martins |
author_facet | LOPES, Estela Gallucci GERALDO, Carlos Alberto MARCILI, Arlei SILVA, Ricardo Duarte KEID, Lara Borges OLIVEIRA, Trícia Maria Ferreira da Silva SOARES, Rodrigo Martins |
author_sort | LOPES, Estela Gallucci |
collection | PubMed |
description | In visceral leishmaniasis, the detection of the agent is of paramount importance to identify reservoirs of infection. Here, we evaluated the diagnostic attributes of PCRs based on primers directed to cytochrome-B (cytB), cytochrome-oxidase-subunit II (coxII), cytochrome-C (cytC), and the minicircle-kDNA. Although PCRs directed to cytB, coxII, cytC were able to detect different species of Leishmania, and the nucleotide sequence of their amplicons allowed the unequivocal differentiation of species, the analytical and diagnostic sensitivity of these PCRs were much lower than the analytical and diagnostic sensitivity of the kDNA-PCR. Among the 73 seropositive animals, the asymptomatic dogs had spleen and bone marrow samples collected and tested; only two animals were positive by PCRs based on cytB, coxII, and cytC, whereas 18 were positive by the kDNA-PCR. Considering the kDNA-PCR results, six dogs had positive spleen and bone marrow samples, eight dogs had positive bone marrow results but negative results in spleen samples and, in four dogs, the reverse situation occurred. We concluded that PCRs based on cytB, coxII, and cytC can be useful tools to identify Leishmania species when used in combination with automated sequencing. The discordance between the results of the kDNA-PCR in bone marrow and spleen samples may indicate that conventional PCR lacks sensitivity for the detection of infected dogs. Thus, primers based on the kDNA should be preferred for the screening of infected dogs. |
format | Online Article Text |
id | pubmed-4879998 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Instituto de Medicina Tropical |
record_format | MEDLINE/PubMed |
spelling | pubmed-48799982016-06-03 PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF Leishmania spp. LOPES, Estela Gallucci GERALDO, Carlos Alberto MARCILI, Arlei SILVA, Ricardo Duarte KEID, Lara Borges OLIVEIRA, Trícia Maria Ferreira da Silva SOARES, Rodrigo Martins Rev Inst Med Trop Sao Paulo Original Article In visceral leishmaniasis, the detection of the agent is of paramount importance to identify reservoirs of infection. Here, we evaluated the diagnostic attributes of PCRs based on primers directed to cytochrome-B (cytB), cytochrome-oxidase-subunit II (coxII), cytochrome-C (cytC), and the minicircle-kDNA. Although PCRs directed to cytB, coxII, cytC were able to detect different species of Leishmania, and the nucleotide sequence of their amplicons allowed the unequivocal differentiation of species, the analytical and diagnostic sensitivity of these PCRs were much lower than the analytical and diagnostic sensitivity of the kDNA-PCR. Among the 73 seropositive animals, the asymptomatic dogs had spleen and bone marrow samples collected and tested; only two animals were positive by PCRs based on cytB, coxII, and cytC, whereas 18 were positive by the kDNA-PCR. Considering the kDNA-PCR results, six dogs had positive spleen and bone marrow samples, eight dogs had positive bone marrow results but negative results in spleen samples and, in four dogs, the reverse situation occurred. We concluded that PCRs based on cytB, coxII, and cytC can be useful tools to identify Leishmania species when used in combination with automated sequencing. The discordance between the results of the kDNA-PCR in bone marrow and spleen samples may indicate that conventional PCR lacks sensitivity for the detection of infected dogs. Thus, primers based on the kDNA should be preferred for the screening of infected dogs. Instituto de Medicina Tropical 2016-05-24 /pmc/articles/PMC4879998/ /pubmed/27253743 http://dx.doi.org/10.1590/S1678-9946201658041 Text en http://creativecommons.org/licenses/by-nc/4.0 This is an open-access article distributed under the terms of the Creative Commons Attribution License |
spellingShingle | Original Article LOPES, Estela Gallucci GERALDO, Carlos Alberto MARCILI, Arlei SILVA, Ricardo Duarte KEID, Lara Borges OLIVEIRA, Trícia Maria Ferreira da Silva SOARES, Rodrigo Martins PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF Leishmania spp. |
title | PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND
MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF
Leishmania spp. |
title_full | PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND
MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF
Leishmania spp. |
title_fullStr | PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND
MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF
Leishmania spp. |
title_full_unstemmed | PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND
MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF
Leishmania spp. |
title_short | PERFORMANCE OF CONVENTIONAL PCRs BASED ON PRIMERS DIRECTED TO NUCLEAR AND
MITOCHONDRIAL GENES FOR THE DETECTION AND IDENTIFICATION OF
Leishmania spp. |
title_sort | performance of conventional pcrs based on primers directed to nuclear and
mitochondrial genes for the detection and identification of
leishmania spp. |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4879998/ https://www.ncbi.nlm.nih.gov/pubmed/27253743 http://dx.doi.org/10.1590/S1678-9946201658041 |
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