Cargando…
Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts
Current approaches to single-cell transcriptomic analysis are computationally intensive and require assay-specific modeling, which limits their scope and generality. We propose a novel method that compares and clusters cells based on their transcript-compatibility read counts rather than on the tran...
Autores principales: | Ntranos, Vasilis, Kamath, Govinda M., Zhang, Jesse M., Pachter, Lior, Tse, David N. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881296/ https://www.ncbi.nlm.nih.gov/pubmed/27230763 http://dx.doi.org/10.1186/s13059-016-0970-8 |
Ejemplares similares
-
Deterministic column subset selection for single-cell RNA-Seq
por: McCurdy, Shannon R., et al.
Publicado: (2019) -
BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
por: Gustafsson, Johan, et al.
Publicado: (2021) -
Determining sequencing depth in a single-cell RNA-seq experiment
por: Zhang, Martin Jinye, et al.
Publicado: (2020) -
Improving RNA-Seq expression estimates by correcting for fragment bias
por: Roberts, Adam, et al.
Publicado: (2011) -
CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data
por: Kozlov, Alexey, et al.
Publicado: (2022)