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Tips and nodes are complementary not competing approaches to the calibration of molecular clocks
Molecular clock methodology provides the best means of establishing evolutionary timescales, the accuracy and precision of which remain reliant on calibration, traditionally based on fossil constraints on clade (node) ages. Tip calibration has been developed to obviate undesirable aspects of node ca...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881336/ https://www.ncbi.nlm.nih.gov/pubmed/27095263 http://dx.doi.org/10.1098/rsbl.2015.0975 |
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author | O'Reilly, Joseph E. Donoghue, Philip C. J. |
author_facet | O'Reilly, Joseph E. Donoghue, Philip C. J. |
author_sort | O'Reilly, Joseph E. |
collection | PubMed |
description | Molecular clock methodology provides the best means of establishing evolutionary timescales, the accuracy and precision of which remain reliant on calibration, traditionally based on fossil constraints on clade (node) ages. Tip calibration has been developed to obviate undesirable aspects of node calibration, including the need for maximum age constraints that are invariably very difficult to justify. Instead, tip calibration incorporates fossil species as dated tips alongside living relatives, potentially improving the accuracy and precision of divergence time estimates. We demonstrate that tip calibration yields node calibrations that violate fossil evidence, contributing to unjustifiably young and ancient age estimates, less precise and (presumably) accurate than conventional node calibration. However, we go on to show that node and tip calibrations are complementary, producing meaningful age estimates, with node minima enforcing realistic ages and fossil tips interacting with node calibrations to objectively define maximum age constraints on clade ages. Together, tip and node calibrations may yield evolutionary timescales that are better justified, more precise and accurate than either calibration strategy can achieve alone. |
format | Online Article Text |
id | pubmed-4881336 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-48813362016-05-27 Tips and nodes are complementary not competing approaches to the calibration of molecular clocks O'Reilly, Joseph E. Donoghue, Philip C. J. Biol Lett Special Feature Molecular clock methodology provides the best means of establishing evolutionary timescales, the accuracy and precision of which remain reliant on calibration, traditionally based on fossil constraints on clade (node) ages. Tip calibration has been developed to obviate undesirable aspects of node calibration, including the need for maximum age constraints that are invariably very difficult to justify. Instead, tip calibration incorporates fossil species as dated tips alongside living relatives, potentially improving the accuracy and precision of divergence time estimates. We demonstrate that tip calibration yields node calibrations that violate fossil evidence, contributing to unjustifiably young and ancient age estimates, less precise and (presumably) accurate than conventional node calibration. However, we go on to show that node and tip calibrations are complementary, producing meaningful age estimates, with node minima enforcing realistic ages and fossil tips interacting with node calibrations to objectively define maximum age constraints on clade ages. Together, tip and node calibrations may yield evolutionary timescales that are better justified, more precise and accurate than either calibration strategy can achieve alone. The Royal Society 2016-04 /pmc/articles/PMC4881336/ /pubmed/27095263 http://dx.doi.org/10.1098/rsbl.2015.0975 Text en © 2016 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Special Feature O'Reilly, Joseph E. Donoghue, Philip C. J. Tips and nodes are complementary not competing approaches to the calibration of molecular clocks |
title | Tips and nodes are complementary not competing approaches to the calibration of molecular clocks |
title_full | Tips and nodes are complementary not competing approaches to the calibration of molecular clocks |
title_fullStr | Tips and nodes are complementary not competing approaches to the calibration of molecular clocks |
title_full_unstemmed | Tips and nodes are complementary not competing approaches to the calibration of molecular clocks |
title_short | Tips and nodes are complementary not competing approaches to the calibration of molecular clocks |
title_sort | tips and nodes are complementary not competing approaches to the calibration of molecular clocks |
topic | Special Feature |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881336/ https://www.ncbi.nlm.nih.gov/pubmed/27095263 http://dx.doi.org/10.1098/rsbl.2015.0975 |
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