Cargando…
The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T
Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the prev...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4885058/ https://www.ncbi.nlm.nih.gov/pubmed/27187466 http://dx.doi.org/10.3390/toxins8050143 |
_version_ | 1782434461656285184 |
---|---|
author | Hurst, Mark R. H. Beattie, Amy Altermann, Eric Moraga, Roger M. Harper, Lincoln A. Calder, Joanne Laugraud, Aurelie |
author_facet | Hurst, Mark R. H. Beattie, Amy Altermann, Eric Moraga, Roger M. Harper, Lincoln A. Calder, Joanne Laugraud, Aurelie |
author_sort | Hurst, Mark R. H. |
collection | PubMed |
description | Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the previously documented Y. entomophaga Yen-TC gene cluster, the genome encodes a diverse array of toxins, including two type III secretion systems, and five rhs-associated gene clusters. As well as these multicomponent systems, several orthologs of known insect toxins, such as VIP2 toxin and the binary toxin PirAB, and distant orthologs of some mammalian toxins, including repeats-in-toxin, a cytolethal distending toxin, hemolysin-like genes and an adenylate cyclase were identified. The genome also contains a large number of hypothetical proteins and orthologs of known effector proteins, such as LopT, as well as genes encoding a wide range of proteolytic determinants, including metalloproteases and pathogen fitness determinants, such as genes involved in iron metabolism. The bioinformatic data derived from the current in silico analysis, along with previous information on the pathobiology of Y. entomophaga against its insect hosts, suggests that a number of these virulence systems are required for survival in the hemocoel and incapacitation of the insect host. |
format | Online Article Text |
id | pubmed-4885058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-48850582016-05-31 The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T Hurst, Mark R. H. Beattie, Amy Altermann, Eric Moraga, Roger M. Harper, Lincoln A. Calder, Joanne Laugraud, Aurelie Toxins (Basel) Article Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the previously documented Y. entomophaga Yen-TC gene cluster, the genome encodes a diverse array of toxins, including two type III secretion systems, and five rhs-associated gene clusters. As well as these multicomponent systems, several orthologs of known insect toxins, such as VIP2 toxin and the binary toxin PirAB, and distant orthologs of some mammalian toxins, including repeats-in-toxin, a cytolethal distending toxin, hemolysin-like genes and an adenylate cyclase were identified. The genome also contains a large number of hypothetical proteins and orthologs of known effector proteins, such as LopT, as well as genes encoding a wide range of proteolytic determinants, including metalloproteases and pathogen fitness determinants, such as genes involved in iron metabolism. The bioinformatic data derived from the current in silico analysis, along with previous information on the pathobiology of Y. entomophaga against its insect hosts, suggests that a number of these virulence systems are required for survival in the hemocoel and incapacitation of the insect host. MDPI 2016-05-11 /pmc/articles/PMC4885058/ /pubmed/27187466 http://dx.doi.org/10.3390/toxins8050143 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hurst, Mark R. H. Beattie, Amy Altermann, Eric Moraga, Roger M. Harper, Lincoln A. Calder, Joanne Laugraud, Aurelie The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T |
title | The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T |
title_full | The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T |
title_fullStr | The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T |
title_full_unstemmed | The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T |
title_short | The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T |
title_sort | draft genome sequence of the yersinia entomophaga entomopathogenic type strain mh96t |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4885058/ https://www.ncbi.nlm.nih.gov/pubmed/27187466 http://dx.doi.org/10.3390/toxins8050143 |
work_keys_str_mv | AT hurstmarkrh thedraftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT beattieamy thedraftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT altermanneric thedraftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT moragarogerm thedraftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT harperlincolna thedraftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT calderjoanne thedraftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT laugraudaurelie thedraftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT hurstmarkrh draftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT beattieamy draftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT altermanneric draftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT moragarogerm draftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT harperlincolna draftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT calderjoanne draftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t AT laugraudaurelie draftgenomesequenceoftheyersiniaentomophagaentomopathogenictypestrainmh96t |