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The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T

Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the prev...

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Autores principales: Hurst, Mark R. H., Beattie, Amy, Altermann, Eric, Moraga, Roger M., Harper, Lincoln A., Calder, Joanne, Laugraud, Aurelie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4885058/
https://www.ncbi.nlm.nih.gov/pubmed/27187466
http://dx.doi.org/10.3390/toxins8050143
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author Hurst, Mark R. H.
Beattie, Amy
Altermann, Eric
Moraga, Roger M.
Harper, Lincoln A.
Calder, Joanne
Laugraud, Aurelie
author_facet Hurst, Mark R. H.
Beattie, Amy
Altermann, Eric
Moraga, Roger M.
Harper, Lincoln A.
Calder, Joanne
Laugraud, Aurelie
author_sort Hurst, Mark R. H.
collection PubMed
description Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the previously documented Y. entomophaga Yen-TC gene cluster, the genome encodes a diverse array of toxins, including two type III secretion systems, and five rhs-associated gene clusters. As well as these multicomponent systems, several orthologs of known insect toxins, such as VIP2 toxin and the binary toxin PirAB, and distant orthologs of some mammalian toxins, including repeats-in-toxin, a cytolethal distending toxin, hemolysin-like genes and an adenylate cyclase were identified. The genome also contains a large number of hypothetical proteins and orthologs of known effector proteins, such as LopT, as well as genes encoding a wide range of proteolytic determinants, including metalloproteases and pathogen fitness determinants, such as genes involved in iron metabolism. The bioinformatic data derived from the current in silico analysis, along with previous information on the pathobiology of Y. entomophaga against its insect hosts, suggests that a number of these virulence systems are required for survival in the hemocoel and incapacitation of the insect host.
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spelling pubmed-48850582016-05-31 The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T Hurst, Mark R. H. Beattie, Amy Altermann, Eric Moraga, Roger M. Harper, Lincoln A. Calder, Joanne Laugraud, Aurelie Toxins (Basel) Article Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the previously documented Y. entomophaga Yen-TC gene cluster, the genome encodes a diverse array of toxins, including two type III secretion systems, and five rhs-associated gene clusters. As well as these multicomponent systems, several orthologs of known insect toxins, such as VIP2 toxin and the binary toxin PirAB, and distant orthologs of some mammalian toxins, including repeats-in-toxin, a cytolethal distending toxin, hemolysin-like genes and an adenylate cyclase were identified. The genome also contains a large number of hypothetical proteins and orthologs of known effector proteins, such as LopT, as well as genes encoding a wide range of proteolytic determinants, including metalloproteases and pathogen fitness determinants, such as genes involved in iron metabolism. The bioinformatic data derived from the current in silico analysis, along with previous information on the pathobiology of Y. entomophaga against its insect hosts, suggests that a number of these virulence systems are required for survival in the hemocoel and incapacitation of the insect host. MDPI 2016-05-11 /pmc/articles/PMC4885058/ /pubmed/27187466 http://dx.doi.org/10.3390/toxins8050143 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hurst, Mark R. H.
Beattie, Amy
Altermann, Eric
Moraga, Roger M.
Harper, Lincoln A.
Calder, Joanne
Laugraud, Aurelie
The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T
title The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T
title_full The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T
title_fullStr The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T
title_full_unstemmed The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T
title_short The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T
title_sort draft genome sequence of the yersinia entomophaga entomopathogenic type strain mh96t
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4885058/
https://www.ncbi.nlm.nih.gov/pubmed/27187466
http://dx.doi.org/10.3390/toxins8050143
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