Cargando…

The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds

Λ-Cobalt(III) sepulchrate trinitrate crystallizes in P6(3)22 with Z = 2 (Z′ = 1/6) at room temperature. Slabs perpendicular to the hexagonal axis comprise molecules Co(sepulchrate) alternating with nitrate groups A and B. Coordinated by six sepulchrate molecules, highly disordered nitrate groups C a...

Descripción completa

Detalles Bibliográficos
Autores principales: Dey, Somnath, Schönleber, Andreas, Mondal, Swastik, Prathapa, Siriyara Jagannatha, van Smaalen, Sander, Larsen, Finn Krebs
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886617/
https://www.ncbi.nlm.nih.gov/pubmed/27240768
http://dx.doi.org/10.1107/S2052520616005503
_version_ 1782434641925373952
author Dey, Somnath
Schönleber, Andreas
Mondal, Swastik
Prathapa, Siriyara Jagannatha
van Smaalen, Sander
Larsen, Finn Krebs
author_facet Dey, Somnath
Schönleber, Andreas
Mondal, Swastik
Prathapa, Siriyara Jagannatha
van Smaalen, Sander
Larsen, Finn Krebs
author_sort Dey, Somnath
collection PubMed
description Λ-Cobalt(III) sepulchrate trinitrate crystallizes in P6(3)22 with Z = 2 (Z′ = 1/6) at room temperature. Slabs perpendicular to the hexagonal axis comprise molecules Co(sepulchrate) alternating with nitrate groups A and B. Coordinated by six sepulchrate molecules, highly disordered nitrate groups C are accommodated between the slabs. Here we report the fully ordered, low-temperature crystal structure of Co(sep)(NO(3))(3). It is found to be a high-Z′ structure with Z′ = 12 of the 12-fold [Image: see text] superstructure with monoclinic symmetry P2(1) (c unique). Correlations between structural parameters are effectively removed by refinements within the superspace approach. Superstructure formation is governed by a densification of the packing in conjunction with ordering of nitrate group C, the latter assuming different orientations for each of the Z′ = 12 independent copies in the superstructure. The Co(sep) moiety exhibits small structural variations over its 12 independent copies, while orientations of nitrate groups A and B vary less than the orientations of the nitrate group C do. Molecular packing in the superstructure is found to be determined by short C—H⋯H—C contacts, with H⋯H distances of 2.2–2.3 Å, and by short C—H⋯O contacts, with H⋯O distances down to 2.2 Å. These contacts presumably represent weak C—H⋯O hydrogen bonds, but in any case they prevent further densification of the structure and strengthening of weak N—H⋯O hydrogen bonds with observed H⋯O distances of 2.4–2.6 Å.
format Online
Article
Text
id pubmed-4886617
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-48866172016-06-08 The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds Dey, Somnath Schönleber, Andreas Mondal, Swastik Prathapa, Siriyara Jagannatha van Smaalen, Sander Larsen, Finn Krebs Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers Λ-Cobalt(III) sepulchrate trinitrate crystallizes in P6(3)22 with Z = 2 (Z′ = 1/6) at room temperature. Slabs perpendicular to the hexagonal axis comprise molecules Co(sepulchrate) alternating with nitrate groups A and B. Coordinated by six sepulchrate molecules, highly disordered nitrate groups C are accommodated between the slabs. Here we report the fully ordered, low-temperature crystal structure of Co(sep)(NO(3))(3). It is found to be a high-Z′ structure with Z′ = 12 of the 12-fold [Image: see text] superstructure with monoclinic symmetry P2(1) (c unique). Correlations between structural parameters are effectively removed by refinements within the superspace approach. Superstructure formation is governed by a densification of the packing in conjunction with ordering of nitrate group C, the latter assuming different orientations for each of the Z′ = 12 independent copies in the superstructure. The Co(sep) moiety exhibits small structural variations over its 12 independent copies, while orientations of nitrate groups A and B vary less than the orientations of the nitrate group C do. Molecular packing in the superstructure is found to be determined by short C—H⋯H—C contacts, with H⋯H distances of 2.2–2.3 Å, and by short C—H⋯O contacts, with H⋯O distances down to 2.2 Å. These contacts presumably represent weak C—H⋯O hydrogen bonds, but in any case they prevent further densification of the structure and strengthening of weak N—H⋯O hydrogen bonds with observed H⋯O distances of 2.4–2.6 Å. International Union of Crystallography 2016-05-26 /pmc/articles/PMC4886617/ /pubmed/27240768 http://dx.doi.org/10.1107/S2052520616005503 Text en © Somnath Dey et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Dey, Somnath
Schönleber, Andreas
Mondal, Swastik
Prathapa, Siriyara Jagannatha
van Smaalen, Sander
Larsen, Finn Krebs
The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds
title The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds
title_full The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds
title_fullStr The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds
title_full_unstemmed The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds
title_short The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds
title_sort z′ = 12 superstructure of λ-cobalt(iii) sepulchrate trinitrate governed by c—h⋯o hydrogen bonds
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886617/
https://www.ncbi.nlm.nih.gov/pubmed/27240768
http://dx.doi.org/10.1107/S2052520616005503
work_keys_str_mv AT deysomnath thez12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT schonleberandreas thez12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT mondalswastik thez12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT prathapasiriyarajagannatha thez12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT vansmaalensander thez12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT larsenfinnkrebs thez12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT deysomnath z12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT schonleberandreas z12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT mondalswastik z12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT prathapasiriyarajagannatha z12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT vansmaalensander z12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds
AT larsenfinnkrebs z12superstructureoflcobaltiiisepulchratetrinitrategovernedbychohydrogenbonds