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The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds
Λ-Cobalt(III) sepulchrate trinitrate crystallizes in P6(3)22 with Z = 2 (Z′ = 1/6) at room temperature. Slabs perpendicular to the hexagonal axis comprise molecules Co(sepulchrate) alternating with nitrate groups A and B. Coordinated by six sepulchrate molecules, highly disordered nitrate groups C a...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886617/ https://www.ncbi.nlm.nih.gov/pubmed/27240768 http://dx.doi.org/10.1107/S2052520616005503 |
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author | Dey, Somnath Schönleber, Andreas Mondal, Swastik Prathapa, Siriyara Jagannatha van Smaalen, Sander Larsen, Finn Krebs |
author_facet | Dey, Somnath Schönleber, Andreas Mondal, Swastik Prathapa, Siriyara Jagannatha van Smaalen, Sander Larsen, Finn Krebs |
author_sort | Dey, Somnath |
collection | PubMed |
description | Λ-Cobalt(III) sepulchrate trinitrate crystallizes in P6(3)22 with Z = 2 (Z′ = 1/6) at room temperature. Slabs perpendicular to the hexagonal axis comprise molecules Co(sepulchrate) alternating with nitrate groups A and B. Coordinated by six sepulchrate molecules, highly disordered nitrate groups C are accommodated between the slabs. Here we report the fully ordered, low-temperature crystal structure of Co(sep)(NO(3))(3). It is found to be a high-Z′ structure with Z′ = 12 of the 12-fold [Image: see text] superstructure with monoclinic symmetry P2(1) (c unique). Correlations between structural parameters are effectively removed by refinements within the superspace approach. Superstructure formation is governed by a densification of the packing in conjunction with ordering of nitrate group C, the latter assuming different orientations for each of the Z′ = 12 independent copies in the superstructure. The Co(sep) moiety exhibits small structural variations over its 12 independent copies, while orientations of nitrate groups A and B vary less than the orientations of the nitrate group C do. Molecular packing in the superstructure is found to be determined by short C—H⋯H—C contacts, with H⋯H distances of 2.2–2.3 Å, and by short C—H⋯O contacts, with H⋯O distances down to 2.2 Å. These contacts presumably represent weak C—H⋯O hydrogen bonds, but in any case they prevent further densification of the structure and strengthening of weak N—H⋯O hydrogen bonds with observed H⋯O distances of 2.4–2.6 Å. |
format | Online Article Text |
id | pubmed-4886617 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-48866172016-06-08 The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds Dey, Somnath Schönleber, Andreas Mondal, Swastik Prathapa, Siriyara Jagannatha van Smaalen, Sander Larsen, Finn Krebs Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers Λ-Cobalt(III) sepulchrate trinitrate crystallizes in P6(3)22 with Z = 2 (Z′ = 1/6) at room temperature. Slabs perpendicular to the hexagonal axis comprise molecules Co(sepulchrate) alternating with nitrate groups A and B. Coordinated by six sepulchrate molecules, highly disordered nitrate groups C are accommodated between the slabs. Here we report the fully ordered, low-temperature crystal structure of Co(sep)(NO(3))(3). It is found to be a high-Z′ structure with Z′ = 12 of the 12-fold [Image: see text] superstructure with monoclinic symmetry P2(1) (c unique). Correlations between structural parameters are effectively removed by refinements within the superspace approach. Superstructure formation is governed by a densification of the packing in conjunction with ordering of nitrate group C, the latter assuming different orientations for each of the Z′ = 12 independent copies in the superstructure. The Co(sep) moiety exhibits small structural variations over its 12 independent copies, while orientations of nitrate groups A and B vary less than the orientations of the nitrate group C do. Molecular packing in the superstructure is found to be determined by short C—H⋯H—C contacts, with H⋯H distances of 2.2–2.3 Å, and by short C—H⋯O contacts, with H⋯O distances down to 2.2 Å. These contacts presumably represent weak C—H⋯O hydrogen bonds, but in any case they prevent further densification of the structure and strengthening of weak N—H⋯O hydrogen bonds with observed H⋯O distances of 2.4–2.6 Å. International Union of Crystallography 2016-05-26 /pmc/articles/PMC4886617/ /pubmed/27240768 http://dx.doi.org/10.1107/S2052520616005503 Text en © Somnath Dey et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Dey, Somnath Schönleber, Andreas Mondal, Swastik Prathapa, Siriyara Jagannatha van Smaalen, Sander Larsen, Finn Krebs The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds |
title | The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds |
title_full | The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds |
title_fullStr | The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds |
title_full_unstemmed | The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds |
title_short | The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds |
title_sort | z′ = 12 superstructure of λ-cobalt(iii) sepulchrate trinitrate governed by c—h⋯o hydrogen bonds |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886617/ https://www.ncbi.nlm.nih.gov/pubmed/27240768 http://dx.doi.org/10.1107/S2052520616005503 |
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