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On the release of cppxfel for processing X-ray free-electron laser images
As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel, a software package p...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886992/ https://www.ncbi.nlm.nih.gov/pubmed/27275149 http://dx.doi.org/10.1107/S1600576716006981 |
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author | Ginn, Helen Mary Evans, Gwyndaf Sauter, Nicholas K. Stuart, David Ian |
author_facet | Ginn, Helen Mary Evans, Gwyndaf Sauter, Nicholas K. Stuart, David Ian |
author_sort | Ginn, Helen Mary |
collection | PubMed |
description | As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel, a software package primarily written in C++, which showcases several data analysis techniques, is released. This software package presently indexes images using DIALS (diffraction integration for advanced light sources) and performs an initial orientation matrix refinement, followed by post-refinement of individual images against a reference data set. Cppxfel is released with the hope that the unique and useful elements of this package can be repurposed for existing software packages. However, as released, it produces high-quality crystal structures and is therefore likely to be also useful to experienced users of X-ray free-electron laser (XFEL) software who wish to maximize the information extracted from a limited number of XFEL images. |
format | Online Article Text |
id | pubmed-4886992 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-48869922016-06-06 On the release of cppxfel for processing X-ray free-electron laser images Ginn, Helen Mary Evans, Gwyndaf Sauter, Nicholas K. Stuart, David Ian J Appl Crystallogr Computer Programs As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel, a software package primarily written in C++, which showcases several data analysis techniques, is released. This software package presently indexes images using DIALS (diffraction integration for advanced light sources) and performs an initial orientation matrix refinement, followed by post-refinement of individual images against a reference data set. Cppxfel is released with the hope that the unique and useful elements of this package can be repurposed for existing software packages. However, as released, it produces high-quality crystal structures and is therefore likely to be also useful to experienced users of X-ray free-electron laser (XFEL) software who wish to maximize the information extracted from a limited number of XFEL images. International Union of Crystallography 2016-05-11 /pmc/articles/PMC4886992/ /pubmed/27275149 http://dx.doi.org/10.1107/S1600576716006981 Text en © Helen Mary Ginn et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Computer Programs Ginn, Helen Mary Evans, Gwyndaf Sauter, Nicholas K. Stuart, David Ian On the release of cppxfel for processing X-ray free-electron laser images |
title | On the release of cppxfel for processing X-ray free-electron laser images
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title_full | On the release of cppxfel for processing X-ray free-electron laser images
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title_fullStr | On the release of cppxfel for processing X-ray free-electron laser images
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title_full_unstemmed | On the release of cppxfel for processing X-ray free-electron laser images
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title_short | On the release of cppxfel for processing X-ray free-electron laser images
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title_sort | on the release of cppxfel for processing x-ray free-electron laser images |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886992/ https://www.ncbi.nlm.nih.gov/pubmed/27275149 http://dx.doi.org/10.1107/S1600576716006981 |
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