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On the release of cppxfel for processing X-ray free-electron laser images

As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel, a software package p...

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Detalles Bibliográficos
Autores principales: Ginn, Helen Mary, Evans, Gwyndaf, Sauter, Nicholas K., Stuart, David Ian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886992/
https://www.ncbi.nlm.nih.gov/pubmed/27275149
http://dx.doi.org/10.1107/S1600576716006981
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author Ginn, Helen Mary
Evans, Gwyndaf
Sauter, Nicholas K.
Stuart, David Ian
author_facet Ginn, Helen Mary
Evans, Gwyndaf
Sauter, Nicholas K.
Stuart, David Ian
author_sort Ginn, Helen Mary
collection PubMed
description As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel, a software package primarily written in C++, which showcases several data analysis techniques, is released. This software package presently indexes images using DIALS (diffraction integration for advanced light sources) and performs an initial orientation matrix refinement, followed by post-refinement of individual images against a reference data set. Cppxfel is released with the hope that the unique and useful elements of this package can be repurposed for existing software packages. However, as released, it produces high-quality crystal structures and is therefore likely to be also useful to experienced users of X-ray free-electron laser (XFEL) software who wish to maximize the information extracted from a limited number of XFEL images.
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spelling pubmed-48869922016-06-06 On the release of cppxfel for processing X-ray free-electron laser images Ginn, Helen Mary Evans, Gwyndaf Sauter, Nicholas K. Stuart, David Ian J Appl Crystallogr Computer Programs As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel, a software package primarily written in C++, which showcases several data analysis techniques, is released. This software package presently indexes images using DIALS (diffraction integration for advanced light sources) and performs an initial orientation matrix refinement, followed by post-refinement of individual images against a reference data set. Cppxfel is released with the hope that the unique and useful elements of this package can be repurposed for existing software packages. However, as released, it produces high-quality crystal structures and is therefore likely to be also useful to experienced users of X-ray free-electron laser (XFEL) software who wish to maximize the information extracted from a limited number of XFEL images. International Union of Crystallography 2016-05-11 /pmc/articles/PMC4886992/ /pubmed/27275149 http://dx.doi.org/10.1107/S1600576716006981 Text en © Helen Mary Ginn et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Computer Programs
Ginn, Helen Mary
Evans, Gwyndaf
Sauter, Nicholas K.
Stuart, David Ian
On the release of cppxfel for processing X-ray free-electron laser images
title On the release of cppxfel for processing X-ray free-electron laser images
title_full On the release of cppxfel for processing X-ray free-electron laser images
title_fullStr On the release of cppxfel for processing X-ray free-electron laser images
title_full_unstemmed On the release of cppxfel for processing X-ray free-electron laser images
title_short On the release of cppxfel for processing X-ray free-electron laser images
title_sort on the release of cppxfel for processing x-ray free-electron laser images
topic Computer Programs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886992/
https://www.ncbi.nlm.nih.gov/pubmed/27275149
http://dx.doi.org/10.1107/S1600576716006981
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