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Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()
Maternal mRNA that is present in the mature oocyte plays an important role in the proper development of the early embryo. To elucidate the role of the maternal transcriptome we recently reported a microarray study on individual zebrafish eggs from five different clutches from sibling mothers and sho...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887590/ https://www.ncbi.nlm.nih.gov/pubmed/27284564 http://dx.doi.org/10.1016/j.dib.2016.04.045 |
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author | Pagano, Johanna F.B. Rauwerda, Han de Leeuw, Wim C. Wackers, Paul de Jong, Mark Ensink, Wim Dekker, Rob Nehrdich, Ulrike Spaink, Herman P. Jonker, Martijs Breit, Timo M. |
author_facet | Pagano, Johanna F.B. Rauwerda, Han de Leeuw, Wim C. Wackers, Paul de Jong, Mark Ensink, Wim Dekker, Rob Nehrdich, Ulrike Spaink, Herman P. Jonker, Martijs Breit, Timo M. |
author_sort | Pagano, Johanna F.B. |
collection | PubMed |
description | Maternal mRNA that is present in the mature oocyte plays an important role in the proper development of the early embryo. To elucidate the role of the maternal transcriptome we recently reported a microarray study on individual zebrafish eggs from five different clutches from sibling mothers and showed differences in maternal RNA abundance between and within clutches, “Mother-specific signature in the maternal transcriptome composition of mature, unfertilized Eggs” [1]. Here we provide in detail the applied preprocessing method as well as the R-code to identify expressed and non-expressed genes in the associated transcriptome dataset. Additionally, we provide a website that allows a researcher to search for the expression of their gene of interest in this experiment. |
format | Online Article Text |
id | pubmed-4887590 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48875902016-06-09 Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() Pagano, Johanna F.B. Rauwerda, Han de Leeuw, Wim C. Wackers, Paul de Jong, Mark Ensink, Wim Dekker, Rob Nehrdich, Ulrike Spaink, Herman P. Jonker, Martijs Breit, Timo M. Data Brief Genetics, Genomics and Molecular Biology Maternal mRNA that is present in the mature oocyte plays an important role in the proper development of the early embryo. To elucidate the role of the maternal transcriptome we recently reported a microarray study on individual zebrafish eggs from five different clutches from sibling mothers and showed differences in maternal RNA abundance between and within clutches, “Mother-specific signature in the maternal transcriptome composition of mature, unfertilized Eggs” [1]. Here we provide in detail the applied preprocessing method as well as the R-code to identify expressed and non-expressed genes in the associated transcriptome dataset. Additionally, we provide a website that allows a researcher to search for the expression of their gene of interest in this experiment. Elsevier 2016-04-26 /pmc/articles/PMC4887590/ /pubmed/27284564 http://dx.doi.org/10.1016/j.dib.2016.04.045 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Genetics, Genomics and Molecular Biology Pagano, Johanna F.B. Rauwerda, Han de Leeuw, Wim C. Wackers, Paul de Jong, Mark Ensink, Wim Dekker, Rob Nehrdich, Ulrike Spaink, Herman P. Jonker, Martijs Breit, Timo M. Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() |
title | Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() |
title_full | Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() |
title_fullStr | Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() |
title_full_unstemmed | Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() |
title_short | Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() |
title_sort | transcriptome data on maternal rna of 24 individual zebrafish eggs from five sibling mothers() |
topic | Genetics, Genomics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887590/ https://www.ncbi.nlm.nih.gov/pubmed/27284564 http://dx.doi.org/10.1016/j.dib.2016.04.045 |
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