Cargando…

Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()

Maternal mRNA that is present in the mature oocyte plays an important role in the proper development of the early embryo. To elucidate the role of the maternal transcriptome we recently reported a microarray study on individual zebrafish eggs from five different clutches from sibling mothers and sho...

Descripción completa

Detalles Bibliográficos
Autores principales: Pagano, Johanna F.B., Rauwerda, Han, de Leeuw, Wim C., Wackers, Paul, de Jong, Mark, Ensink, Wim, Dekker, Rob, Nehrdich, Ulrike, Spaink, Herman P., Jonker, Martijs, Breit, Timo M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887590/
https://www.ncbi.nlm.nih.gov/pubmed/27284564
http://dx.doi.org/10.1016/j.dib.2016.04.045
_version_ 1782434751225790464
author Pagano, Johanna F.B.
Rauwerda, Han
de Leeuw, Wim C.
Wackers, Paul
de Jong, Mark
Ensink, Wim
Dekker, Rob
Nehrdich, Ulrike
Spaink, Herman P.
Jonker, Martijs
Breit, Timo M.
author_facet Pagano, Johanna F.B.
Rauwerda, Han
de Leeuw, Wim C.
Wackers, Paul
de Jong, Mark
Ensink, Wim
Dekker, Rob
Nehrdich, Ulrike
Spaink, Herman P.
Jonker, Martijs
Breit, Timo M.
author_sort Pagano, Johanna F.B.
collection PubMed
description Maternal mRNA that is present in the mature oocyte plays an important role in the proper development of the early embryo. To elucidate the role of the maternal transcriptome we recently reported a microarray study on individual zebrafish eggs from five different clutches from sibling mothers and showed differences in maternal RNA abundance between and within clutches, “Mother-specific signature in the maternal transcriptome composition of mature, unfertilized Eggs” [1]. Here we provide in detail the applied preprocessing method as well as the R-code to identify expressed and non-expressed genes in the associated transcriptome dataset. Additionally, we provide a website that allows a researcher to search for the expression of their gene of interest in this experiment.
format Online
Article
Text
id pubmed-4887590
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-48875902016-06-09 Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers() Pagano, Johanna F.B. Rauwerda, Han de Leeuw, Wim C. Wackers, Paul de Jong, Mark Ensink, Wim Dekker, Rob Nehrdich, Ulrike Spaink, Herman P. Jonker, Martijs Breit, Timo M. Data Brief Genetics, Genomics and Molecular Biology Maternal mRNA that is present in the mature oocyte plays an important role in the proper development of the early embryo. To elucidate the role of the maternal transcriptome we recently reported a microarray study on individual zebrafish eggs from five different clutches from sibling mothers and showed differences in maternal RNA abundance between and within clutches, “Mother-specific signature in the maternal transcriptome composition of mature, unfertilized Eggs” [1]. Here we provide in detail the applied preprocessing method as well as the R-code to identify expressed and non-expressed genes in the associated transcriptome dataset. Additionally, we provide a website that allows a researcher to search for the expression of their gene of interest in this experiment. Elsevier 2016-04-26 /pmc/articles/PMC4887590/ /pubmed/27284564 http://dx.doi.org/10.1016/j.dib.2016.04.045 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Pagano, Johanna F.B.
Rauwerda, Han
de Leeuw, Wim C.
Wackers, Paul
de Jong, Mark
Ensink, Wim
Dekker, Rob
Nehrdich, Ulrike
Spaink, Herman P.
Jonker, Martijs
Breit, Timo M.
Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()
title Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()
title_full Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()
title_fullStr Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()
title_full_unstemmed Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()
title_short Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()
title_sort transcriptome data on maternal rna of 24 individual zebrafish eggs from five sibling mothers()
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887590/
https://www.ncbi.nlm.nih.gov/pubmed/27284564
http://dx.doi.org/10.1016/j.dib.2016.04.045
work_keys_str_mv AT paganojohannafb transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT rauwerdahan transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT deleeuwwimc transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT wackerspaul transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT dejongmark transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT ensinkwim transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT dekkerrob transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT nehrdichulrike transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT spainkhermanp transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT jonkermartijs transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers
AT breittimom transcriptomedataonmaternalrnaof24individualzebrafisheggsfromfivesiblingmothers