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De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes

Mauremys reevesii (Geoemydidae) is one of the most common and widespread semi-aquatic turtles in East Asia. The unusually long lifespan of some individuals makes this turtle species a potentially useful model organism for studying the molecular basis of longevity. In this study, pooled total RNA ext...

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Autores principales: Yin, Huazong, Nie, Liuwang, Zhao, Feifei, Zhou, Huaxing, Li, Haifeng, Dong, Xianmei, Zhang, Huanhuan, Wang, Yuqin, Shi, Qiong, Li, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888314/
https://www.ncbi.nlm.nih.gov/pubmed/27257545
http://dx.doi.org/10.7717/peerj.2062
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author Yin, Huazong
Nie, Liuwang
Zhao, Feifei
Zhou, Huaxing
Li, Haifeng
Dong, Xianmei
Zhang, Huanhuan
Wang, Yuqin
Shi, Qiong
Li, Jun
author_facet Yin, Huazong
Nie, Liuwang
Zhao, Feifei
Zhou, Huaxing
Li, Haifeng
Dong, Xianmei
Zhang, Huanhuan
Wang, Yuqin
Shi, Qiong
Li, Jun
author_sort Yin, Huazong
collection PubMed
description Mauremys reevesii (Geoemydidae) is one of the most common and widespread semi-aquatic turtles in East Asia. The unusually long lifespan of some individuals makes this turtle species a potentially useful model organism for studying the molecular basis of longevity. In this study, pooled total RNA extracted from liver, spleen and skeletal-muscle of three adult individuals were sequenced using Illumina Hiseq 2500 platform. A set of telomere-related genes were found in the transcriptome, including tert, tep1, and six shelterin complex proteins coding genes (trf1, trf2, tpp1, pot1, tin2 and rap1). These genes products protect chromosome ends from deterioration and therefore significantly contribute to turtle longevity. The transcriptome data generated in this study provides a comprehensive reference for future molecular studies in the turtle.
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spelling pubmed-48883142016-06-02 De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes Yin, Huazong Nie, Liuwang Zhao, Feifei Zhou, Huaxing Li, Haifeng Dong, Xianmei Zhang, Huanhuan Wang, Yuqin Shi, Qiong Li, Jun PeerJ Genetics Mauremys reevesii (Geoemydidae) is one of the most common and widespread semi-aquatic turtles in East Asia. The unusually long lifespan of some individuals makes this turtle species a potentially useful model organism for studying the molecular basis of longevity. In this study, pooled total RNA extracted from liver, spleen and skeletal-muscle of three adult individuals were sequenced using Illumina Hiseq 2500 platform. A set of telomere-related genes were found in the transcriptome, including tert, tep1, and six shelterin complex proteins coding genes (trf1, trf2, tpp1, pot1, tin2 and rap1). These genes products protect chromosome ends from deterioration and therefore significantly contribute to turtle longevity. The transcriptome data generated in this study provides a comprehensive reference for future molecular studies in the turtle. PeerJ Inc. 2016-05-24 /pmc/articles/PMC4888314/ /pubmed/27257545 http://dx.doi.org/10.7717/peerj.2062 Text en ©2016 Yin et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Genetics
Yin, Huazong
Nie, Liuwang
Zhao, Feifei
Zhou, Huaxing
Li, Haifeng
Dong, Xianmei
Zhang, Huanhuan
Wang, Yuqin
Shi, Qiong
Li, Jun
De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes
title De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes
title_full De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes
title_fullStr De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes
title_full_unstemmed De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes
title_short De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes
title_sort de novo assembly and characterization of the chinese three-keeled pond turtle (mauremys reevesii) transcriptome: presence of longevity-related genes
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888314/
https://www.ncbi.nlm.nih.gov/pubmed/27257545
http://dx.doi.org/10.7717/peerj.2062
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