Cargando…

Molecular clock of HIV-1 envelope genes under early immune selection

BACKGROUND: The molecular clock hypothesis that genes or proteins evolve at a constant rate is a key tool to reveal phylogenetic relationships among species. Using the molecular clock, we can trace an infection back to transmission using HIV-1 sequences from a single time point. Whether or not a str...

Descripción completa

Detalles Bibliográficos
Autores principales:	Park, Sung Yong, Love, Tanzy M. T., Perelson, Alan S., Mack, Wendy J., Lee, Ha Youn
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888660/ https://www.ncbi.nlm.nih.gov/pubmed/27246201 http://dx.doi.org/10.1186/s12977-016-0269-6

Ejemplares similares

Precision detection of recent HIV infections using high-throughput genomic incidence assay
por: Faraci, Gina, et al.
Publicado: (2023)

The HIV Genomic Incidence Assay Meets False Recency Rate and Mean Duration of Recency Infection Performance Standards
por: Park, Sung Yong, et al.
Publicado: (2017)

Daily HIV pre-exposure prophylaxis (PrEP) with tenofovir disoproxil fumarate-emtricitabine reduced Streptococcus and increased Erysipelotrichaceae in rectal microbiota
por: Dubé, Michael P., et al.
Publicado: (2018)

Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population
por: Immonen, Taina T., et al.
Publicado: (2015)

Model Selection and the Molecular Clock
por: Pybus, Oliver G
Publicado: (2006)

Dynamic Correlation between Intrahost HIV-1 Quasispecies Evolution and Disease Progression
por: Lee, Ha Youn, et al.
Publicado: (2008)

A Signature in HIV-1 Envelope Leader Peptide Associated with Transition from Acute to Chronic Infection Impacts Envelope Processing and Infectivity
por: Asmal, Mohammed, et al.
Publicado: (2011)

Molecular Mechanisms Underlying the Arabidopsis Circadian Clock
por: Nakamichi, Norihito
Publicado: (2011)

Breast milk and in utero transmission of HIV-1 select for envelope variants with unique molecular signatures
por: Nakamura, Kyle J., et al.
Publicado: (2017)

Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples
por: Yoshida, Izumi, et al.
Publicado: (2011)

Survival and selection biases in early animal evolution and a source of systematic overestimation in molecular clocks
por: Budd, Graham E., et al.
Publicado: (2020)

Nuclear envelope protein MAN1 regulates clock through BMAL1
por: Lin, Shu-Ting, et al.
Publicado: (2014)

Molecular components of the circadian clock regulate HIV-1 replication
por: Borrmann, Helene, et al.
Publicado: (2023)

Residual Viremia in Treated HIV(+) Individuals
por: Conway, Jessica M., et al.
Publicado: (2016)

Molecular architecture of the uncleaved HIV-1 envelope glycoprotein trimer
por: Mao, Youdong, et al.
Publicado: (2013)

Genotypic and functional properties of early infant HIV-1 envelopes
por: Kishko, Michael, et al.
Publicado: (2011)

Immature neurons in the primate amygdala: changes with early development and disrupted early environment
por: McHale-Matthews, Alexandra C, et al.
Publicado: (2023)

Immature neurons in the primate amygdala: Changes with early development and disrupted early environment
por: McHale-Matthews, Alexandra C., et al.
Publicado: (2023)

Modeling the within-host dynamics of HIV infection
por: Perelson, Alan S, et al.
Publicado: (2013)

Enhancement of viral escape in HIV-1 Nef by STEP vaccination
por: Park, Sung Yong, et al.
Publicado: (2016)

Viral and Latent Reservoir Persistence in HIV-1–Infected Patients on Therapy
por: Kim, Hwijin, et al.
Publicado: (2006)

Molecular Interactions Between Components of the Circadian Clock and the Immune System
por: Hergenhan, Sophia, et al.
Publicado: (2020)

Mammalian Molecular Clocks
por: Kwon, Ilmin, et al.
Publicado: (2011)

An Empirical Method for Establishing Positional Confidence Intervals Tailored for Composite Interval Mapping of QTL
por: Crossett, Andrew, et al.
Publicado: (2010)

Stable HIV-1 envelope glycoprotein immune complexes as vaccine immunogens
por: van Montfort, Thijs, et al.
Publicado: (2011)

Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations
por: Williams, Wilton B., et al.
Publicado: (2017)

Dual Role of HIV-1 Envelope Signal Peptide in Immune Evasion
por: Upadhyay, Chitra, et al.
Publicado: (2022)

Estimating time since infection in early homogeneous HIV-1 samples using a poisson model
por: Giorgi, Elena E, et al.
Publicado: (2010)

Modeling Latently Infected Cell Activation: Viral and Latent Reservoir Persistence, and Viral Blips in HIV-infected Patients on Potent Therapy
por: Rong, Libin, et al.
Publicado: (2009)

Common allergies in urban adolescents and their relationships with asthma control and healthcare utilization
por: Rhee, Hyekyun, et al.
Publicado: (2018)

Interpretability Versus Accuracy: A Comparison of Machine Learning Models Built Using Different Algorithms, Performance Measures, and Features to Predict E. coli Levels in Agricultural Water
por: Weller, Daniel L., et al.
Publicado: (2021)

Tectonic blocks and molecular clocks
por: De Baets, Kenneth, et al.
Publicado: (2016)

The molecular clock of Mycobacterium tuberculosis
por: Menardo, Fabrizio, et al.
Publicado: (2019)

Circadian Clocks, Stress, and Immunity
por: Dumbell, Rebecca, et al.
Publicado: (2016)

An immune clock of human pregnancy
por: Aghaeepour, Nima, et al.
Publicado: (2017)

Conformational plasticity underlies membrane fusion induced by an HIV sequence juxtaposed to the lipid envelope
por: de la Arada, Igor, et al.
Publicado: (2021)

A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence
por: Welbourn, Sarah, et al.
Publicado: (2022)

Developmental Toxicology of Metal Mixtures in Drosophila: Unique Properties of Potency and Interactions of Mercury Isoforms
por: Beamish, Catherine R., et al.
Publicado: (2021)

Non-Molecular-Clock-Like Evolution following Viral Origins in Homo sapiens
por: Mok, Wendy, et al.
Publicado: (2007)

Functional organization of the HIV lipid envelope
por: Huarte, Nerea, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_i01e35vqoeh0qrjsic6fqro3oe