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Integration of new alternative reference strain genome sequences into the Saccharomyces genome database

The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. To provide a wider scope of genetic and phenotypic variation in yeast, the genome sequences and their correspond...

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Autores principales: Song, Giltae, Balakrishnan, Rama, Binkley, Gail, Costanzo, Maria C., Dalusag, Kyla, Demeter, Janos, Engel, Stacia, Hellerstedt, Sage T., Karra, Kalpana, Hitz, Benjamin C., Nash, Robert S., Paskov, Kelley, Sheppard, Travis, Skrzypek, Marek, Weng, Shuai, Wong, Edith, Michael Cherry, J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888754/
https://www.ncbi.nlm.nih.gov/pubmed/27252399
http://dx.doi.org/10.1093/database/baw074
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author Song, Giltae
Balakrishnan, Rama
Binkley, Gail
Costanzo, Maria C.
Dalusag, Kyla
Demeter, Janos
Engel, Stacia
Hellerstedt, Sage T.
Karra, Kalpana
Hitz, Benjamin C.
Nash, Robert S.
Paskov, Kelley
Sheppard, Travis
Skrzypek, Marek
Weng, Shuai
Wong, Edith
Michael Cherry, J.
author_facet Song, Giltae
Balakrishnan, Rama
Binkley, Gail
Costanzo, Maria C.
Dalusag, Kyla
Demeter, Janos
Engel, Stacia
Hellerstedt, Sage T.
Karra, Kalpana
Hitz, Benjamin C.
Nash, Robert S.
Paskov, Kelley
Sheppard, Travis
Skrzypek, Marek
Weng, Shuai
Wong, Edith
Michael Cherry, J.
author_sort Song, Giltae
collection PubMed
description The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. To provide a wider scope of genetic and phenotypic variation in yeast, the genome sequences and their corresponding annotations from 11 alternative S. cerevisiae reference strains have been integrated into SGD. Genomic and protein sequence information for genes from these strains are now available on the Sequence and Protein tab of the corresponding Locus Summary pages. We illustrate how these genome sequences can be utilized to aid our understanding of strain-specific functional and phenotypic differences. Database URL: www.yeastgenome.org
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spelling pubmed-48887542016-06-03 Integration of new alternative reference strain genome sequences into the Saccharomyces genome database Song, Giltae Balakrishnan, Rama Binkley, Gail Costanzo, Maria C. Dalusag, Kyla Demeter, Janos Engel, Stacia Hellerstedt, Sage T. Karra, Kalpana Hitz, Benjamin C. Nash, Robert S. Paskov, Kelley Sheppard, Travis Skrzypek, Marek Weng, Shuai Wong, Edith Michael Cherry, J. Database (Oxford) Database Update The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. To provide a wider scope of genetic and phenotypic variation in yeast, the genome sequences and their corresponding annotations from 11 alternative S. cerevisiae reference strains have been integrated into SGD. Genomic and protein sequence information for genes from these strains are now available on the Sequence and Protein tab of the corresponding Locus Summary pages. We illustrate how these genome sequences can be utilized to aid our understanding of strain-specific functional and phenotypic differences. Database URL: www.yeastgenome.org Oxford University Press 2016-05-31 /pmc/articles/PMC4888754/ /pubmed/27252399 http://dx.doi.org/10.1093/database/baw074 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Update
Song, Giltae
Balakrishnan, Rama
Binkley, Gail
Costanzo, Maria C.
Dalusag, Kyla
Demeter, Janos
Engel, Stacia
Hellerstedt, Sage T.
Karra, Kalpana
Hitz, Benjamin C.
Nash, Robert S.
Paskov, Kelley
Sheppard, Travis
Skrzypek, Marek
Weng, Shuai
Wong, Edith
Michael Cherry, J.
Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
title Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
title_full Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
title_fullStr Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
title_full_unstemmed Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
title_short Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
title_sort integration of new alternative reference strain genome sequences into the saccharomyces genome database
topic Database Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888754/
https://www.ncbi.nlm.nih.gov/pubmed/27252399
http://dx.doi.org/10.1093/database/baw074
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