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A collaborative approach to develop a multi-omics data analytics platform for translational research
The integration and analysis of large datasets in translational research has become an increasingly challenging problem. We propose a collaborative approach to integrate established data management platforms with existing analytical systems to fill the hole in the value chain between data collection...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888831/ https://www.ncbi.nlm.nih.gov/pubmed/27294023 http://dx.doi.org/10.1016/j.atg.2014.09.010 |
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author | Schumacher, Axel Rujan, Tamas Hoefkens, Jens |
author_facet | Schumacher, Axel Rujan, Tamas Hoefkens, Jens |
author_sort | Schumacher, Axel |
collection | PubMed |
description | The integration and analysis of large datasets in translational research has become an increasingly challenging problem. We propose a collaborative approach to integrate established data management platforms with existing analytical systems to fill the hole in the value chain between data collection and data exploitation. Our proposal in particular ensures data security and provides support for widely distributed teams of researchers. As a successful example for such an approach, we describe the implementation of a unified single platform that combines capabilities of the knowledge management platform tranSMART and the data analysis system Genedata Analyst™. The combined end-to-end platform helps to quickly find, enter, integrate, analyze, extract, and share patient- and drug-related data in the context of translational R&D projects. |
format | Online Article Text |
id | pubmed-4888831 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48888312016-06-10 A collaborative approach to develop a multi-omics data analytics platform for translational research Schumacher, Axel Rujan, Tamas Hoefkens, Jens Appl Transl Genom Special Issue - Genomic Knowledge Sharing The integration and analysis of large datasets in translational research has become an increasingly challenging problem. We propose a collaborative approach to integrate established data management platforms with existing analytical systems to fill the hole in the value chain between data collection and data exploitation. Our proposal in particular ensures data security and provides support for widely distributed teams of researchers. As a successful example for such an approach, we describe the implementation of a unified single platform that combines capabilities of the knowledge management platform tranSMART and the data analysis system Genedata Analyst™. The combined end-to-end platform helps to quickly find, enter, integrate, analyze, extract, and share patient- and drug-related data in the context of translational R&D projects. Elsevier 2014-09-16 /pmc/articles/PMC4888831/ /pubmed/27294023 http://dx.doi.org/10.1016/j.atg.2014.09.010 Text en © 2014 Published by Elsevier B.V. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/). |
spellingShingle | Special Issue - Genomic Knowledge Sharing Schumacher, Axel Rujan, Tamas Hoefkens, Jens A collaborative approach to develop a multi-omics data analytics platform for translational research |
title | A collaborative approach to develop a multi-omics data analytics platform for translational research |
title_full | A collaborative approach to develop a multi-omics data analytics platform for translational research |
title_fullStr | A collaborative approach to develop a multi-omics data analytics platform for translational research |
title_full_unstemmed | A collaborative approach to develop a multi-omics data analytics platform for translational research |
title_short | A collaborative approach to develop a multi-omics data analytics platform for translational research |
title_sort | collaborative approach to develop a multi-omics data analytics platform for translational research |
topic | Special Issue - Genomic Knowledge Sharing |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888831/ https://www.ncbi.nlm.nih.gov/pubmed/27294023 http://dx.doi.org/10.1016/j.atg.2014.09.010 |
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