Cargando…

The need to redefine genomic data sharing: A focus on data accessibility

DNAdigest's mission is to investigate and address the issues hindering efficient and ethical genomic data sharing in the human genomics research community. We conducted contextual interviews with human genomics researchers in clinical, academic or industrial R&D settings about their experie...

Descripción completa

Detalles Bibliográficos
Autores principales: van Schaik, Tempest A., Kovalevskaya, Nadezda V., Protopapas, Elena, Wahid, Hamza, Nielsen, Fiona G.G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888834/
https://www.ncbi.nlm.nih.gov/pubmed/27294022
http://dx.doi.org/10.1016/j.atg.2014.09.013
_version_ 1782434909490511872
author van Schaik, Tempest A.
Kovalevskaya, Nadezda V.
Protopapas, Elena
Wahid, Hamza
Nielsen, Fiona G.G.
author_facet van Schaik, Tempest A.
Kovalevskaya, Nadezda V.
Protopapas, Elena
Wahid, Hamza
Nielsen, Fiona G.G.
author_sort van Schaik, Tempest A.
collection PubMed
description DNAdigest's mission is to investigate and address the issues hindering efficient and ethical genomic data sharing in the human genomics research community. We conducted contextual interviews with human genomics researchers in clinical, academic or industrial R&D settings about their experience with accessing and sharing human genomic data. The qualitative interviews were followed by an online survey which provided quantitative support for our findings. Here we present the generalised workflow for accessing human genomic data through both public and restricted-access repositories and discuss reported points of frustration and their possible improvements. We discuss how data discoverability and accessibility are lacking in current mechanisms and how these are the prerequisites for adoption of best practices in the research community. We summarise current initiatives related to genomic data discovery and present a new data discovery platform available at http://nucleobase.co.uk.
format Online
Article
Text
id pubmed-4888834
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-48888342016-06-10 The need to redefine genomic data sharing: A focus on data accessibility van Schaik, Tempest A. Kovalevskaya, Nadezda V. Protopapas, Elena Wahid, Hamza Nielsen, Fiona G.G. Appl Transl Genom Special Issue - Genomic Knowledge Sharing DNAdigest's mission is to investigate and address the issues hindering efficient and ethical genomic data sharing in the human genomics research community. We conducted contextual interviews with human genomics researchers in clinical, academic or industrial R&D settings about their experience with accessing and sharing human genomic data. The qualitative interviews were followed by an online survey which provided quantitative support for our findings. Here we present the generalised workflow for accessing human genomic data through both public and restricted-access repositories and discuss reported points of frustration and their possible improvements. We discuss how data discoverability and accessibility are lacking in current mechanisms and how these are the prerequisites for adoption of best practices in the research community. We summarise current initiatives related to genomic data discovery and present a new data discovery platform available at http://nucleobase.co.uk. Elsevier 2014-09-28 /pmc/articles/PMC4888834/ /pubmed/27294022 http://dx.doi.org/10.1016/j.atg.2014.09.013 Text en © 2014 The Authors http://creativecommons.org/licenses/by/3.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Special Issue - Genomic Knowledge Sharing
van Schaik, Tempest A.
Kovalevskaya, Nadezda V.
Protopapas, Elena
Wahid, Hamza
Nielsen, Fiona G.G.
The need to redefine genomic data sharing: A focus on data accessibility
title The need to redefine genomic data sharing: A focus on data accessibility
title_full The need to redefine genomic data sharing: A focus on data accessibility
title_fullStr The need to redefine genomic data sharing: A focus on data accessibility
title_full_unstemmed The need to redefine genomic data sharing: A focus on data accessibility
title_short The need to redefine genomic data sharing: A focus on data accessibility
title_sort need to redefine genomic data sharing: a focus on data accessibility
topic Special Issue - Genomic Knowledge Sharing
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888834/
https://www.ncbi.nlm.nih.gov/pubmed/27294022
http://dx.doi.org/10.1016/j.atg.2014.09.013
work_keys_str_mv AT vanschaiktempesta theneedtoredefinegenomicdatasharingafocusondataaccessibility
AT kovalevskayanadezdav theneedtoredefinegenomicdatasharingafocusondataaccessibility
AT protopapaselena theneedtoredefinegenomicdatasharingafocusondataaccessibility
AT wahidhamza theneedtoredefinegenomicdatasharingafocusondataaccessibility
AT nielsenfionagg theneedtoredefinegenomicdatasharingafocusondataaccessibility
AT vanschaiktempesta needtoredefinegenomicdatasharingafocusondataaccessibility
AT kovalevskayanadezdav needtoredefinegenomicdatasharingafocusondataaccessibility
AT protopapaselena needtoredefinegenomicdatasharingafocusondataaccessibility
AT wahidhamza needtoredefinegenomicdatasharingafocusondataaccessibility
AT nielsenfionagg needtoredefinegenomicdatasharingafocusondataaccessibility