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The need to redefine genomic data sharing: A focus on data accessibility
DNAdigest's mission is to investigate and address the issues hindering efficient and ethical genomic data sharing in the human genomics research community. We conducted contextual interviews with human genomics researchers in clinical, academic or industrial R&D settings about their experie...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888834/ https://www.ncbi.nlm.nih.gov/pubmed/27294022 http://dx.doi.org/10.1016/j.atg.2014.09.013 |
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author | van Schaik, Tempest A. Kovalevskaya, Nadezda V. Protopapas, Elena Wahid, Hamza Nielsen, Fiona G.G. |
author_facet | van Schaik, Tempest A. Kovalevskaya, Nadezda V. Protopapas, Elena Wahid, Hamza Nielsen, Fiona G.G. |
author_sort | van Schaik, Tempest A. |
collection | PubMed |
description | DNAdigest's mission is to investigate and address the issues hindering efficient and ethical genomic data sharing in the human genomics research community. We conducted contextual interviews with human genomics researchers in clinical, academic or industrial R&D settings about their experience with accessing and sharing human genomic data. The qualitative interviews were followed by an online survey which provided quantitative support for our findings. Here we present the generalised workflow for accessing human genomic data through both public and restricted-access repositories and discuss reported points of frustration and their possible improvements. We discuss how data discoverability and accessibility are lacking in current mechanisms and how these are the prerequisites for adoption of best practices in the research community. We summarise current initiatives related to genomic data discovery and present a new data discovery platform available at http://nucleobase.co.uk. |
format | Online Article Text |
id | pubmed-4888834 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48888342016-06-10 The need to redefine genomic data sharing: A focus on data accessibility van Schaik, Tempest A. Kovalevskaya, Nadezda V. Protopapas, Elena Wahid, Hamza Nielsen, Fiona G.G. Appl Transl Genom Special Issue - Genomic Knowledge Sharing DNAdigest's mission is to investigate and address the issues hindering efficient and ethical genomic data sharing in the human genomics research community. We conducted contextual interviews with human genomics researchers in clinical, academic or industrial R&D settings about their experience with accessing and sharing human genomic data. The qualitative interviews were followed by an online survey which provided quantitative support for our findings. Here we present the generalised workflow for accessing human genomic data through both public and restricted-access repositories and discuss reported points of frustration and their possible improvements. We discuss how data discoverability and accessibility are lacking in current mechanisms and how these are the prerequisites for adoption of best practices in the research community. We summarise current initiatives related to genomic data discovery and present a new data discovery platform available at http://nucleobase.co.uk. Elsevier 2014-09-28 /pmc/articles/PMC4888834/ /pubmed/27294022 http://dx.doi.org/10.1016/j.atg.2014.09.013 Text en © 2014 The Authors http://creativecommons.org/licenses/by/3.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/3.0/). |
spellingShingle | Special Issue - Genomic Knowledge Sharing van Schaik, Tempest A. Kovalevskaya, Nadezda V. Protopapas, Elena Wahid, Hamza Nielsen, Fiona G.G. The need to redefine genomic data sharing: A focus on data accessibility |
title | The need to redefine genomic data sharing: A focus on data accessibility |
title_full | The need to redefine genomic data sharing: A focus on data accessibility |
title_fullStr | The need to redefine genomic data sharing: A focus on data accessibility |
title_full_unstemmed | The need to redefine genomic data sharing: A focus on data accessibility |
title_short | The need to redefine genomic data sharing: A focus on data accessibility |
title_sort | need to redefine genomic data sharing: a focus on data accessibility |
topic | Special Issue - Genomic Knowledge Sharing |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888834/ https://www.ncbi.nlm.nih.gov/pubmed/27294022 http://dx.doi.org/10.1016/j.atg.2014.09.013 |
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