Cargando…

Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma

MicroRNAs(miRNAs), as non-coding molecules, were proved to be correlated with gene expression in naspharyngeal carcinoma (NPC) development. In this research, a comprehensive meta-analysis of eight independent miRNA expression studies in NPC was preformed by using robust rank aggregation method (RRA)...

Descripción completa

Detalles Bibliográficos
Autores principales: Luan, Junwen, Wang, Junfu, Su, Qinghong, Chen, Xuemei, Jiang, Guosheng, Xu, Xiaoqun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4891136/
https://www.ncbi.nlm.nih.gov/pubmed/26824418
http://dx.doi.org/10.18632/oncotarget.7013
_version_ 1782435229878714368
author Luan, Junwen
Wang, Junfu
Su, Qinghong
Chen, Xuemei
Jiang, Guosheng
Xu, Xiaoqun
author_facet Luan, Junwen
Wang, Junfu
Su, Qinghong
Chen, Xuemei
Jiang, Guosheng
Xu, Xiaoqun
author_sort Luan, Junwen
collection PubMed
description MicroRNAs(miRNAs), as non-coding molecules, were proved to be correlated with gene expression in naspharyngeal carcinoma (NPC) development. In this research, a comprehensive meta-analysis of eight independent miRNA expression studies in NPC was preformed by using robust rank aggregation method (RRA), which contained a total of 775 tumor and 227 non-cancerous samples. There were 7 significant dysregulated miRNAs identified including three increased (miR-483–5p, miR-29c-3p and miR-205–5p) and four decreased (miR-29b-3p, let-7d-5p, miR-100– 5p and let-7g-5p) miRNAs. Subsequently, the miRNA target prediction and pathway enrichment analysis were carried out to find out the biological and functional relevant genes involved in the meta-signature miRNA regulation. Finally, several signaling and cancer pathogenesis pathways were suggested to be more frequently associated with the progression of NPC. In this research the meta-signature miRNA identified may be used to develop a series of diagnostic and prognostic biomarkers for NPC that serve specificity for use in clinics.
format Online
Article
Text
id pubmed-4891136
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Impact Journals LLC
record_format MEDLINE/PubMed
spelling pubmed-48911362016-06-23 Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma Luan, Junwen Wang, Junfu Su, Qinghong Chen, Xuemei Jiang, Guosheng Xu, Xiaoqun Oncotarget Research Paper MicroRNAs(miRNAs), as non-coding molecules, were proved to be correlated with gene expression in naspharyngeal carcinoma (NPC) development. In this research, a comprehensive meta-analysis of eight independent miRNA expression studies in NPC was preformed by using robust rank aggregation method (RRA), which contained a total of 775 tumor and 227 non-cancerous samples. There were 7 significant dysregulated miRNAs identified including three increased (miR-483–5p, miR-29c-3p and miR-205–5p) and four decreased (miR-29b-3p, let-7d-5p, miR-100– 5p and let-7g-5p) miRNAs. Subsequently, the miRNA target prediction and pathway enrichment analysis were carried out to find out the biological and functional relevant genes involved in the meta-signature miRNA regulation. Finally, several signaling and cancer pathogenesis pathways were suggested to be more frequently associated with the progression of NPC. In this research the meta-signature miRNA identified may be used to develop a series of diagnostic and prognostic biomarkers for NPC that serve specificity for use in clinics. Impact Journals LLC 2016-01-25 /pmc/articles/PMC4891136/ /pubmed/26824418 http://dx.doi.org/10.18632/oncotarget.7013 Text en Copyright: © 2016 Luan et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Luan, Junwen
Wang, Junfu
Su, Qinghong
Chen, Xuemei
Jiang, Guosheng
Xu, Xiaoqun
Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma
title Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma
title_full Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma
title_fullStr Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma
title_full_unstemmed Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma
title_short Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma
title_sort meta-analysis of the differentially expressed microrna profiles in nasopharyngeal carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4891136/
https://www.ncbi.nlm.nih.gov/pubmed/26824418
http://dx.doi.org/10.18632/oncotarget.7013
work_keys_str_mv AT luanjunwen metaanalysisofthedifferentiallyexpressedmicrornaprofilesinnasopharyngealcarcinoma
AT wangjunfu metaanalysisofthedifferentiallyexpressedmicrornaprofilesinnasopharyngealcarcinoma
AT suqinghong metaanalysisofthedifferentiallyexpressedmicrornaprofilesinnasopharyngealcarcinoma
AT chenxuemei metaanalysisofthedifferentiallyexpressedmicrornaprofilesinnasopharyngealcarcinoma
AT jiangguosheng metaanalysisofthedifferentiallyexpressedmicrornaprofilesinnasopharyngealcarcinoma
AT xuxiaoqun metaanalysisofthedifferentiallyexpressedmicrornaprofilesinnasopharyngealcarcinoma