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Informed kmer selection for de novo transcriptome assembly

Motivation: De novo transcriptome assembly is an integral part for many RNA-seq workflows. Common applications include sequencing of non-model organisms, cancer or meta transcriptomes. Most de novo transcriptome assemblers use the de Bruijn graph (DBG) as the underlying data structure. The quality o...

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Detalles Bibliográficos
Autores principales:	Durai, Dilip A., Schulz, Marcel H.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Hitseq Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4892416/ https://www.ncbi.nlm.nih.gov/pubmed/27153653 http://dx.doi.org/10.1093/bioinformatics/btw217

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