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The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes
A surrogate model is a black box model that reproduces the output of another more complex model at a single time point. This is to be distinguished from the method of surrogate data, used in time series. The purpose of a surrogate is to reduce the time necessary for a computation at the cost of rigo...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4892541/ https://www.ncbi.nlm.nih.gov/pubmed/27258010 http://dx.doi.org/10.1371/journal.pone.0156574 |
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author | Pruett, W. Andrew Hester, Robert L. |
author_facet | Pruett, W. Andrew Hester, Robert L. |
author_sort | Pruett, W. Andrew |
collection | PubMed |
description | A surrogate model is a black box model that reproduces the output of another more complex model at a single time point. This is to be distinguished from the method of surrogate data, used in time series. The purpose of a surrogate is to reduce the time necessary for a computation at the cost of rigor and generality. We describe a method of constructing surrogates in the form of support vector machine (SVM) regressions for the purpose of exploring the parameter space of physiological models. Our focus is on the methodology of surrogate creation and accuracy assessment in comparison to the original model. This is done in the context of a simulation of hemorrhage in one model, “Small”, and renal denervation in another, HumMod. In both cases, the surrogate predicts the drop in mean arterial pressure following the intervention. We asked three questions concerning surrogate models: (1) how many training examples are necessary to obtain an accurate surrogate, (2) is surrogate accuracy homogeneous, and (3) how much can computation time be reduced when using a surrogate. We found the minimum training set size that would guarantee maximal accuracy was widely variable, but could be algorithmically generated. The average error for the pressure response to the protocols was -0.05±2.47 in Small, and -0.3 +/- 3.94 mmHg in HumMod. In the Small model, error grew with actual pressure drop, and in HumMod, larger pressure drops were overestimated by the surrogates. Surrogate use resulted in a 6 order of magnitude decrease in computation time. These results suggest surrogate modeling is a valuable tool for generating predictions of an integrative model’s behavior on densely sampled subsets of its parameter space. |
format | Online Article Text |
id | pubmed-4892541 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-48925412016-06-16 The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes Pruett, W. Andrew Hester, Robert L. PLoS One Research Article A surrogate model is a black box model that reproduces the output of another more complex model at a single time point. This is to be distinguished from the method of surrogate data, used in time series. The purpose of a surrogate is to reduce the time necessary for a computation at the cost of rigor and generality. We describe a method of constructing surrogates in the form of support vector machine (SVM) regressions for the purpose of exploring the parameter space of physiological models. Our focus is on the methodology of surrogate creation and accuracy assessment in comparison to the original model. This is done in the context of a simulation of hemorrhage in one model, “Small”, and renal denervation in another, HumMod. In both cases, the surrogate predicts the drop in mean arterial pressure following the intervention. We asked three questions concerning surrogate models: (1) how many training examples are necessary to obtain an accurate surrogate, (2) is surrogate accuracy homogeneous, and (3) how much can computation time be reduced when using a surrogate. We found the minimum training set size that would guarantee maximal accuracy was widely variable, but could be algorithmically generated. The average error for the pressure response to the protocols was -0.05±2.47 in Small, and -0.3 +/- 3.94 mmHg in HumMod. In the Small model, error grew with actual pressure drop, and in HumMod, larger pressure drops were overestimated by the surrogates. Surrogate use resulted in a 6 order of magnitude decrease in computation time. These results suggest surrogate modeling is a valuable tool for generating predictions of an integrative model’s behavior on densely sampled subsets of its parameter space. Public Library of Science 2016-06-03 /pmc/articles/PMC4892541/ /pubmed/27258010 http://dx.doi.org/10.1371/journal.pone.0156574 Text en © 2016 Pruett, Hester http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Pruett, W. Andrew Hester, Robert L. The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes |
title | The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes |
title_full | The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes |
title_fullStr | The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes |
title_full_unstemmed | The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes |
title_short | The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes |
title_sort | creation of surrogate models for fast estimation of complex model outcomes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4892541/ https://www.ncbi.nlm.nih.gov/pubmed/27258010 http://dx.doi.org/10.1371/journal.pone.0156574 |
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